RNA id: TU54458


Basic Information

Item Value
RNA id TU54458
length 219
lncRNA type inter_gene
GC content 0.66
exon number 1
gene id G43686
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28475108 ~ 28475326 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAGGGGAGAGAAACTGAGGCACTTGAGCACGAAGACTAGGCTGGGAGGAGTTGAGAGGCGGCACTGATGGCTGGGGGGGAGGTGGCTGCTGCTGCCCGGCCCTGGCTTGTGCTGCTCCGCTACTGCCGAACATTGCGCTCTGCATCTGGGGGGcacaggggtggggggagagcGTCAGAGCAGAGAGGAGGGGCCCACAGAGGCAGGGCTGGAGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54457 lncRNA downstream 4571 28470334 ~ 28470537 (-) True G43685
TU54439 lncRNA downstream 127634 28343277 ~ 28347474 (-) True G43670
TU54394 lncRNA downstream 240402 28229410 ~ 28234706 (-) True G43626
TU54342 lncRNA downstream 402321 28070138 ~ 28072787 (-) False G43594
TU54338 lncRNA downstream 412655 28062249 ~ 28062453 (-) True G43593
TU54459 lncRNA upstream 130 28475456 ~ 28476100 (-) True G43687
TU54460 lncRNA upstream 1829 28477155 ~ 28477508 (-) True G43688
TU54461 lncRNA upstream 4759 28480085 ~ 28480483 (-) True G43689
TU54462 lncRNA upstream 6406 28481732 ~ 28482055 (-) True G43690
TU54463 lncRNA upstream 13516 28488842 ~ 28491096 (-) True G43691
AMCG00013326 mRNA downstream 257050 28210403 ~ 28218058 (-) True AMCG00013326
AMCG00013325 mRNA downstream 275315 28196957 ~ 28199793 (-) True AMCG00013325
AMCG00013319 mRNA downstream 344976 28128668 ~ 28130132 (-) True AMCG00013319
AMCG00013318 mRNA downstream 396406 28074541 ~ 28078702 (-) True AMCG00013318
AMCG00013313 mRNA downstream 547781 27917922 ~ 27927327 (-) True AMCG00013313
AMCG00013331 mRNA upstream 17620 28492946 ~ 28495999 (-) True AMCG00013331
AMCG00013332 mRNA upstream 26696 28502022 ~ 28521437 (-) True AMCG00013332
AMCG00013339 mRNA upstream 296607 28771933 ~ 28777474 (-) True AMCG00013339
AMCG00013348 mRNA upstream 499364 28974690 ~ 28989005 (-) True AMCG00013348
AMCG00013349 mRNA upstream 516111 28991437 ~ 28996380 (-) True AMCG00013349
TU54456 other downstream 7202 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 402321 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 905957 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 1182035 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1917784 26556354 ~ 26557324 (-) True AMCG00013264
TU54700 other upstream 778070 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 1531438 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 1605710 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 1605710 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 1690491 30165817 ~ 30169136 (-) False AMCG00013390

Expression Profile