RNA id: TU54460


Basic Information

Item Value
RNA id TU54460
length 354
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G43688
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28477155 ~ 28477508 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAGAGGGTACGGAGAGTAGGAGTTGGGAGAAGACTGCTGCTCTTTGGTCTGCAGGTCACTGAGGCCTTGGgcctgggggtggggtgggtagCTGTCCAGGGCTGATTTGCCGGCGCCGGGGTGCAGGCTGGGGTGAGGaggcggctgctgctgcttcataAGCAGGGCCTGGGCCAGCTGGCGCTGGTGCTGTTGGATTTGCTGCTGCATGTTATTGATTGTACGTGCAACCTGCGAAAAGAGCATCTTGTCAAGGGTGGGGTATTCGTTTAGGTTTAAACAACTGAGAACTGAATGAGCCTTATTGTGTATAAATCATGAATTTATTGACTCTTGACACTGTTCAGCCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54459 lncRNA downstream 1055 28475456 ~ 28476100 (-) True G43687
TU54458 lncRNA downstream 1829 28475108 ~ 28475326 (-) True G43686
TU54457 lncRNA downstream 6618 28470334 ~ 28470537 (-) True G43685
TU54439 lncRNA downstream 129681 28343277 ~ 28347474 (-) True G43670
TU54394 lncRNA downstream 242449 28229410 ~ 28234706 (-) True G43626
TU54461 lncRNA upstream 2577 28480085 ~ 28480483 (-) True G43689
TU54462 lncRNA upstream 4224 28481732 ~ 28482055 (-) True G43690
TU54463 lncRNA upstream 11334 28488842 ~ 28491096 (-) True G43691
TU54496 lncRNA upstream 199316 28676824 ~ 28722166 (-) True G43714
TU54497 lncRNA upstream 199316 28676824 ~ 28767352 (-) False G43714
AMCG00013326 mRNA downstream 259097 28210403 ~ 28218058 (-) True AMCG00013326
AMCG00013325 mRNA downstream 277362 28196957 ~ 28199793 (-) True AMCG00013325
AMCG00013319 mRNA downstream 347023 28128668 ~ 28130132 (-) True AMCG00013319
AMCG00013318 mRNA downstream 398453 28074541 ~ 28078702 (-) True AMCG00013318
AMCG00013313 mRNA downstream 549828 27917922 ~ 27927327 (-) True AMCG00013313
AMCG00013331 mRNA upstream 15438 28492946 ~ 28495999 (-) True AMCG00013331
AMCG00013332 mRNA upstream 24514 28502022 ~ 28521437 (-) True AMCG00013332
AMCG00013339 mRNA upstream 294425 28771933 ~ 28777474 (-) True AMCG00013339
AMCG00013348 mRNA upstream 497182 28974690 ~ 28989005 (-) True AMCG00013348
AMCG00013349 mRNA upstream 513929 28991437 ~ 28996380 (-) True AMCG00013349
TU54456 other downstream 9249 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 404368 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 908004 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 1184082 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1919831 26556354 ~ 26557324 (-) True AMCG00013264
TU54700 other upstream 775888 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 1529256 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 1603528 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 1603528 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 1688309 30165817 ~ 30169136 (-) False AMCG00013390

Expression Profile