RNA id: TU54461


Basic Information

Item Value
RNA id TU54461
length 399
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G43689
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28480085 ~ 28480483 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACACAACAGGACTTatatcacttttgttttgttatcctGATTAAAACGTGGAGCTCAGCATCAACACAAAAGGTGACGCATTCATTAGGTAACTTGACTTAAATACAACAGGTACTGAATAACCAAACACTGTTGGACCGGGACCTGCAAATCCTCTCAGAGCCGAGGCAAGGGTCAGGCATACCCGAGTAAGAGCTGCTCCAGCCGGGCACCAGGCCCAGCGCGCTGCCGCCCCACGTCGAGGACGGCTTGGTGTTGGTAAGGCCAGGAGGGGGCCGGGTGGGAGCCGTAGTGTTTCGGGGGCCTTGCGGCACTTTCCACAGCTCGTGAGATAGCGAGGCCTGGGTGTGGGAGATGGGGCCGGGAGACCAGGTGGACTTCATGTCCGAGAGTTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54460 lncRNA downstream 2577 28477155 ~ 28477508 (-) True G43688
TU54459 lncRNA downstream 3985 28475456 ~ 28476100 (-) True G43687
TU54458 lncRNA downstream 4759 28475108 ~ 28475326 (-) True G43686
TU54457 lncRNA downstream 9548 28470334 ~ 28470537 (-) True G43685
TU54439 lncRNA downstream 132611 28343277 ~ 28347474 (-) True G43670
TU54462 lncRNA upstream 1249 28481732 ~ 28482055 (-) True G43690
TU54463 lncRNA upstream 8359 28488842 ~ 28491096 (-) True G43691
TU54496 lncRNA upstream 196341 28676824 ~ 28722166 (-) True G43714
TU54497 lncRNA upstream 196341 28676824 ~ 28767352 (-) False G43714
TU54508 lncRNA upstream 235808 28716291 ~ 28717940 (-) True G43724
AMCG00013326 mRNA downstream 262027 28210403 ~ 28218058 (-) True AMCG00013326
AMCG00013325 mRNA downstream 280292 28196957 ~ 28199793 (-) True AMCG00013325
AMCG00013319 mRNA downstream 349953 28128668 ~ 28130132 (-) True AMCG00013319
AMCG00013318 mRNA downstream 401383 28074541 ~ 28078702 (-) True AMCG00013318
AMCG00013313 mRNA downstream 552758 27917922 ~ 27927327 (-) True AMCG00013313
AMCG00013331 mRNA upstream 12463 28492946 ~ 28495999 (-) True AMCG00013331
AMCG00013332 mRNA upstream 21539 28502022 ~ 28521437 (-) True AMCG00013332
AMCG00013339 mRNA upstream 291450 28771933 ~ 28777474 (-) True AMCG00013339
AMCG00013348 mRNA upstream 494207 28974690 ~ 28989005 (-) True AMCG00013348
AMCG00013349 mRNA upstream 510954 28991437 ~ 28996380 (-) True AMCG00013349
TU54456 other downstream 12179 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 407298 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 910934 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 1187012 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1922761 26556354 ~ 26557324 (-) True AMCG00013264
TU54700 other upstream 772913 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 1526281 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 1600553 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 1600553 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 1685334 30165817 ~ 30169136 (-) False AMCG00013390

Expression Profile