RNA id: TU54489


Basic Information

Item Value
RNA id TU54489
length 598
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G43712
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28738123 ~ 28738753 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggaatttggaggccaagtcaacaccttgaactcgtgattcatcagaccaggccaccttcttccattgctccgtggtccagttctgatgctcacgtgcccattgtaggcgctttcagcagtggacaggggtcagcatgggcaccctgactggtctgcggctacgcagccccatacgcaacaaactgcgacgcACTGTGacttctgacacctttctatcggaaccagcattaactttttcagcaatttgagctacagtagctcgtctgttggatcggaccacacgggccagccttcgctccccacgtgcatcagtgagccttggccgccatgaccctgtcgccggttcaccgcttttccttccttggaccacttttgataggtactgagcactgcagaccgggaacaccccacaagagctgcagttttggagaggcccttgtcaaagtcactcagatccttactcttgcccatttttcctgcttctaacacatcaactttgaggacaaaatgttcacttgctgtctaatatatcccacccactgacaggtgccatgataacgagattatcagtgttattcacttcacctgtcagtggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54481 lncRNA upstream 55949 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA upstream 55949 28680810 ~ 28682174 (+) False AMCG00013336
TU54444 lncRNA upstream 348163 28389689 ~ 28389960 (+) True G43673
TU54325 lncRNA upstream 665324 28068646 ~ 28072799 (+) True AMCG00013317
TU54159 lncRNA upstream 1320336 27270028 ~ 27417787 (+) True G43438
TU54625 lncRNA downstream 411225 29149978 ~ 29151334 (+) True G43810
TU54612 lncRNA downstream 417946 29156699 ~ 29158493 (+) True G43799
TU54679 lncRNA downstream 438298 29177051 ~ 29178266 (+) False G43853
TU54680 lncRNA downstream 438298 29177051 ~ 29178266 (+) False G43853
TU54681 lncRNA downstream 438298 29177051 ~ 29178266 (+) True G43853
AMCG00013338 mRNA upstream 4452 28727573 ~ 28733671 (+) True AMCG00013338
AMCG00013337 mRNA upstream 21711 28704047 ~ 28716412 (+) True AMCG00013337
AMCG00013336 mRNA upstream 51985 28676542 ~ 28686138 (+) False AMCG00013336
AMCG00013333 mRNA upstream 114612 28611303 ~ 28623511 (+) True AMCG00013333
AMCG00013334 mRNA upstream 127728 28610105 ~ 28610395 (+) True AMCG00013334
AMCG00013340 mRNA downstream 56993 28795746 ~ 28799306 (+) True AMCG00013340
AMCG00013341 mRNA downstream 102999 28841752 ~ 28914840 (+) True AMCG00013341
AMCG00013342 mRNA downstream 180000 28918753 ~ 28936041 (+) True AMCG00013342
AMCG00013343 mRNA downstream 230775 28969528 ~ 28970154 (+) True AMCG00013343
AMCG00013345 mRNA downstream 265292 29004045 ~ 29011275 (+) True AMCG00013345
TU54454 other upstream 249340 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 802185 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 1147305 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 1322837 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 1579402 27158302 ~ 27158721 (+) True G43434
TU54615 other downstream 365536 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 901870 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 1182314 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 1480157 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 1752074 30490827 ~ 30495656 (+) True AMCG00013416

Expression Profile