RNA id: TU54497


Basic Information

Item Value
RNA id TU54497
length 2671
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G43714
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28676824 ~ 28767352 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatatatatatatatatatatatatatatatatacacacaagtaCTTTCCAATAAAACACTTCCTGTTTGTGACGATGCTTAAGATCACCACACTGCATCATGGGAGTTCTGAGAAAGTCTGACCTAAAGAGACAGAACCTCAATGCACCGAATCATCCCCACAGAGACGTGGATATGGACAACACGGACAGAGACGGGACGCTCCTGAAAGCAGATCCAGTCCATGACAACAACTgggaaaatgaagaagaaaggaaagaggGAAAACCGAGTCTCTCTTCCCCACACGATTAATTTACACAGCCGACAATTAGAAAGCCCAACGGGAGTGAGACTTCTCTCACAAACCCAGATAAACAAACGTACAGATCTCATTCTGAAGTGTTACTTACACTGTACAGCAACGTCTAGTTATTGCAAGTTATCGACACGTACAAATAtccatttcaaattcatttaCACTCGTTTAAAAAAGCAGAGTCCAAAAAATAGAGTCAAGGAGCCTGCCTGGCTGGCCGAGGTCTCCTTCACGATTACCTGAAGGCCAGGGAAGGAAACTGCCCTGCCTGAAGCGAGAGAGGTATGAGAGGTATTTCTGCTGGCACGTCTCGCCTCCGGGTTTTTGGTACTGCGTTGACCGACAAGTGACGCTTTCCTGGATTTGTGGTCACGGGGGGAAAACAGGCTATGCCAAAACACACCGATTGAGAAGTCCAGCTTCGCCCGGCTGACGAGCAACTCAAACACTGGACTCATGACATTGAAAACAttcaatgatgatgatgttgatatatatataaacaaataaaaaatcactTTGTGGATGAAATGCAGGGTAGTTGGCTCATTTAAAGAGTTGAGAGTCAAAAGCAAAGACATTTGAAGATTTCCTTAAACATCTTTGAAGCTCAGTGCTTCTGACAGACCGCTGACCGCACTGCAGGGGCCCGTATTGAACACGGGGGGCCGATTCTGCATCTTTAGTGTGCTTTAAGATATACACACAAGGACACGGTTAATTGGAGAGCTCTTTTGTATTCACAGTGTAGAAAACATCTCCCTTTCCCTGCGGTCAACTACATTCCTGTTCACTCAAGTCCGCTATTCCAGTCTGAGTGGAAGAAGTCTCTCTCCATCGGATATCAGAGAAATACCGCGTCCTATGAGGTAAGACAAACACTAAATCCTTTCCTGCCTGTATGAGATCATCCACGCCGTGTTTCACAGACACCAGAAGTACATCTAAactacagaataaattaaaaaaaagaatccgCAATTCAACCAATGAATAAAAGCGACTACGGCGATGTCCCGAtccacactctcacacaacCGTTCACTCGTTAAAAGGCTACGGACGGGACCCTACGCAAACACCAAGGCAGTGCTCCTGAAATGTCGGGAATTTCAAGTGTTAGTTTACCGAAAACTGGCAAACCGTAACGgctgtcttttcttttataCAGTTTCTCTCAATTATTGCTTACGAGCCCCTGGCGTTTGTCTTCGACTCCGGGCAGTCCTGAGAGGGCCGTCAAACGTGTGCCGCAGCTTTGTTTAATTACTTATCCATTAATTATTAATCCACCGACACGTCACCCTCCAGACACCGTCTCCTGCCAACGGGCACAACGTCCCTGAATCCCCGCGCTGTAAACCGTACGGAAGGGGCGAGCGAGTGCGTCTGGCCCCCTGCGGCGGAGACCCCACCCAGCTCTCCCAGGACTGCAGTGATAAGATAACCAGACCCGACCGACGGCAGCATCAGCACAACAGGAGCCATTCGACCTTTCCTCCGATGGCTTAATTCGATACCCTTTCGGGTCATGTTGTCAGAACCACACGCTAGATAaacagcagttttgtttttttccagtccTCGAGAGCATGAACATCCCTGTAAACCAGTGGAAGGCGTCCCTGGGCGCAGAACCCGACCTGATCGTAGCGGGAGGACGGGAAACGGGAGACCCACGGACACGAGCTGGTGGGCACCTCTGTTGCCCAGCCCCCCGAGGAGTGCCGTCTTCTCACGCCACCCCTGGGCCAGAGCCCACGGAAGGACTCCTGAGCTGAGCACTGCAGGATCAGGGACACCTCTGCCAATAGCACCCAGAGGATTTTTACACATAAGAGTAGAAACAATTGTACTTATTGCTTGTGGCAAATATTTGGCTACTTTACTACCTCATAAATCTAAACTTGACCTAAATAAAGATCAGAAACTGTGTGCTTGATGGTGGGCAGCTCCTGGGCTTGGCACGGCACGACACCGGCCGCCACCCGCTCATTAAAACTagaaatctttttttgttgtttattgtttcGCATGAAGTTGTATGTTCTGTGATCAGGCACAGTCACTGCGCCGTGGAGAGCTGCTGATGTTTCCCAACTGGCCGCTAGGAAAACAGATCCCAAGGTGCAAAATAGAGCCCTTTACGTTTTAAATGCTTctcgttttctttttgtattcttttaatCCGTTTCTCATTCGGTTGTGCAACTGTGCCGTTGTTGAGGGACGATGTGGAGACCGTGGGGGGGGTTAGTAAGGCAGTCTGGCACGGGCTGCCTCTGTCGGGGATCGTCTGCAGGGGGACGGGGTAGGACGGGGTTTGTCCGTCTAGCGGATGTCCCTCCTTCCCCCGGGGGAAACCCCCCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54463 lncRNA downstream 185728 28488842 ~ 28491096 (-) True G43691
TU54462 lncRNA downstream 194769 28481732 ~ 28482055 (-) True G43690
TU54461 lncRNA downstream 196341 28480085 ~ 28480483 (-) True G43689
TU54460 lncRNA downstream 199316 28477155 ~ 28477508 (-) True G43688
TU54459 lncRNA downstream 200724 28475456 ~ 28476100 (-) True G43687
TU54654 lncRNA upstream 347870 29115222 ~ 29117961 (-) True G43834
TU54656 lncRNA upstream 347870 29115222 ~ 29117961 (-) False G43834
TU54650 lncRNA upstream 352021 29119373 ~ 29121319 (-) True G43831
TU54758 lncRNA upstream 730358 29497710 ~ 29499573 (-) True G43919
TU54896 lncRNA upstream 1159031 29926383 ~ 30028230 (-) True G44034
AMCG00013332 mRNA downstream 155387 28502022 ~ 28521437 (-) True AMCG00013332
AMCG00013331 mRNA downstream 180825 28492946 ~ 28495999 (-) True AMCG00013331
AMCG00013326 mRNA downstream 458766 28210403 ~ 28218058 (-) True AMCG00013326
AMCG00013325 mRNA downstream 477031 28196957 ~ 28199793 (-) True AMCG00013325
AMCG00013319 mRNA downstream 546692 28128668 ~ 28130132 (-) True AMCG00013319
AMCG00013339 mRNA upstream 4581 28771933 ~ 28777474 (-) True AMCG00013339
AMCG00013348 mRNA upstream 207338 28974690 ~ 28989005 (-) True AMCG00013348
AMCG00013349 mRNA upstream 224085 28991437 ~ 28996380 (-) True AMCG00013349
AMCG00013347 mRNA upstream 294536 29061888 ~ 29063240 (-) True AMCG00013347
AMCG00013353 mRNA upstream 331635 29098987 ~ 29114047 (-) True AMCG00013353
TU54456 other downstream 208918 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 604037 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 1107673 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 1383751 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 2119500 26556354 ~ 26557324 (-) True AMCG00013264
TU54700 other upstream 486044 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 1239412 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 1313684 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 1313684 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 1398465 30165817 ~ 30169136 (-) False AMCG00013390

Expression Profile