RNA id: TU54511


Basic Information

Item Value
RNA id TU54511
length 397
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G43725
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28737957 ~ 28738773 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

accgatcagccataacattatgaccactgacaggtgaagtgaataacactgataatctcgttatcatggcacctgtcagtgggtgggatatattagacagcaagtgaacattttgtcctcaaagttgatgtgttagaagcaggaaaaatgggcaagagtaaggatctgagtgactttgacaagggcctctccaaaactgcagctcttgtggggtgttcccggtctgcagtgctcagtacctatcaaaagtggtccaaggaaggaaaagcggtgaaccggcgacagggtcatggcggccaaggctcactgatgcacgtggggagcgaaggctggcccgtgtggtccgatccaacagacggacctacacaatattaggcaggtggtcgtaatgttatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54496 lncRNA downstream 15791 28676824 ~ 28722166 (-) True G43714
TU54508 lncRNA downstream 20017 28716291 ~ 28717940 (-) True G43724
TU54463 lncRNA downstream 246861 28488842 ~ 28491096 (-) True G43691
TU54462 lncRNA downstream 255902 28481732 ~ 28482055 (-) True G43690
TU54461 lncRNA downstream 257474 28480085 ~ 28480483 (-) True G43689
TU54654 lncRNA upstream 376449 29115222 ~ 29117961 (-) True G43834
TU54656 lncRNA upstream 376449 29115222 ~ 29117961 (-) False G43834
TU54650 lncRNA upstream 380600 29119373 ~ 29121319 (-) True G43831
TU54758 lncRNA upstream 758937 29497710 ~ 29499573 (-) True G43919
TU54896 lncRNA upstream 1187610 29926383 ~ 30028230 (-) True G44034
AMCG00013332 mRNA downstream 216520 28502022 ~ 28521437 (-) True AMCG00013332
AMCG00013331 mRNA downstream 241958 28492946 ~ 28495999 (-) True AMCG00013331
AMCG00013326 mRNA downstream 519899 28210403 ~ 28218058 (-) True AMCG00013326
AMCG00013325 mRNA downstream 538164 28196957 ~ 28199793 (-) True AMCG00013325
AMCG00013319 mRNA downstream 607825 28128668 ~ 28130132 (-) True AMCG00013319
AMCG00013339 mRNA upstream 33160 28771933 ~ 28777474 (-) True AMCG00013339
AMCG00013348 mRNA upstream 235917 28974690 ~ 28989005 (-) True AMCG00013348
AMCG00013349 mRNA upstream 252664 28991437 ~ 28996380 (-) True AMCG00013349
AMCG00013347 mRNA upstream 323115 29061888 ~ 29063240 (-) True AMCG00013347
AMCG00013353 mRNA upstream 360214 29098987 ~ 29114047 (-) True AMCG00013353
TU54456 other downstream 270051 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 665170 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 1168806 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 1444884 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 2180633 26556354 ~ 26557324 (-) True AMCG00013264
TU54700 other upstream 514623 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 1267991 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 1342263 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 1342263 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 1427044 30165817 ~ 30169136 (-) False AMCG00013390

Expression Profile