RNA id: TU54612


Basic Information

Item Value
RNA id TU54612
length 1795
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G43799
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29156699 ~ 29158493 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agTGCCTTCAGCTCCATCGCAGCATTACTGGGAAGAGAAGATGTATTAAAGGAGAGCGTTGGACCCGGCGCTCGGCTCGGCCaggaagaacataaaaaaacaaactgttggGAAACAAAACCGAGGAAACAAGGGCTGCAGGTCCTTCTTTTATTATATCAAGTGTTGCAAAATGCAAGTTGCCACTTTATTATCCCCCATGAGGGACGTGTATGGGAGCGTCAGGCAggtttagatttattttttgggtcCGTTGTGCTGTGAACAGCGTTCTGCATCCTGCGTCCTGGTCTCTCTCCATGAGCTGAAAGACTGAgcgttctgtttgtttttcttaaattatttggATAGCAGATCTGAACggtgtacctttttttttttaatctgtgtattGTACTTGTTAACATGTGAAAAGGTTATTGACGGTTTGCGTTTATTGTGCGCAGACTTTGCTCTGTGGGTCGTGAAATATTCTGCACATTCAAATGACTTTCACTTTGCAaagtaaagctttttttttcattcaaaaatTTCGGGTTGATGGATCATTGGCCTCGTGTGATTTTCTGAGCCCCGTCGGGGGCAGATTTCATGTCTTTTCACCTTGACCTTCTTTCAAAAGCAGGCGTGGTCCCGTCGGGATGGTTTGGCTGTATCAGACCGTGATCTTCCTCAATATTGACACGTTCGCACAGCCCCACCTTCAGTACAGTCATGTTTTCTTGAGTCGgactggggaaaaacaaacctcTGCATTGTTCTCCAATCAGCCACACTTTCCGTTGCCATGACTAGAATAATCCAAAACAGATTATTAAAGCATGCAAGATCCCCTTTCATCATACAGGCTTAGTTGATGATGCTTTATATATGACCCTGTATATAGAAATGAGACCCTTTGTGTGTTGGCTGAGAGCTGTGCTTTTAGTTCATTTGTAACTCCGCGGCCGAGTGTAGCTCCTCCACGCTGCAGTGTGAGCCGAGCAGGACCGCTGTTTGAAACAGTGATCGAAATCAGACTCGTTTTATATTCCTTTTTGTGCAACACTATCTTCTGCAAAGTGCCATGTTTCATTTTAAGcatttaataacagaaaactGAGTTTGCCCAATGTTATTTAAAGCCCTACTGTTAAATTTcattcagttttagtttttcactgATTTTAAGccttctgtatttgttttttattatttttttgtatatgctGTAGGTTAAGTGTAACTTGAATCCTTATGCATATTCTAGTCTTCAGACTTTCCTTGTTAAACCTACAAACGTTCAACATACagttaagagagagagagggagagggtctTGGTTATACTTGAATTCGGTACTTTAGGAATCATACGTATGCCTTTTGGAGGAGCCTGTTCATGCAAGCCTTCCTTTATTGAAGATACAGGTGTCCGATTTATAAATGTTAGTCATAAATGAGAAAAAGCATTAAAGCCACTCTATGGCAGAAGTTAAACCAAatctttaatttatgtttttgtacaCAGTAAAAGGATGAGGGGGTGTTGTCACtgttcactgcctgcatggtcATGTGTTCTTCGGAGACTTTTTctggatgcatttgttttgtgtgtgtgtacattgtttttttattttcctatttttttaatctttgcttttcaaaaacatCTGTAACTTATTTATTAAAGGTGAGTGTTtaatcaccccccacccccgtttTTTTAAGGCTGATTTATAgtacagtatttttgtttttctcccaaaGTCCATATGCAAGCTGCTGTTCAACAATGccaaataaattaacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54625 lncRNA upstream 5365 29149978 ~ 29151334 (+) True G43810
TU54489 lncRNA upstream 417946 28738123 ~ 28738753 (+) True G43712
TU54481 lncRNA upstream 474525 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA upstream 474525 28680810 ~ 28682174 (+) False AMCG00013336
TU54444 lncRNA upstream 766739 28389689 ~ 28389960 (+) True G43673
TU54679 lncRNA downstream 18558 29177051 ~ 29178266 (+) False G43853
TU54680 lncRNA downstream 18558 29177051 ~ 29178266 (+) False G43853
TU54681 lncRNA downstream 18558 29177051 ~ 29178266 (+) True G43853
TU54684 lncRNA downstream 20605 29179098 ~ 29202721 (+) True G43855
TU54727 lncRNA downstream 275557 29434050 ~ 29446698 (+) True G43895
AMCG00013356 mRNA upstream 114 29150242 ~ 29156585 (+) True AMCG00013356
AMCG00013352 mRNA upstream 35264 29115453 ~ 29121435 (+) True AMCG00013352
AMCG00013351 mRNA upstream 65092 29080000 ~ 29091607 (+) True AMCG00013351
AMCG00013350 mRNA upstream 88297 29067830 ~ 29068402 (+) True AMCG00013350
AMCG00013344 mRNA upstream 97059 29033142 ~ 29059640 (+) True AMCG00013344
AMCG00013363 mRNA downstream 409996 29568489 ~ 29573439 (+) True AMCG00013363
AMCG00013365 mRNA downstream 427758 29586251 ~ 29627558 (+) True AMCG00013365
AMCG00013364 mRNA downstream 491008 29649501 ~ 29667051 (+) True AMCG00013364
AMCG00013367 mRNA downstream 539339 29697832 ~ 29710210 (+) True AMCG00013367
AMCG00013368 mRNA downstream 563152 29721645 ~ 29724010 (+) True AMCG00013368
TU54615 other upstream 52122 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 667916 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 1220761 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 1565881 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 1741413 27385665 ~ 27415286 (+) True AMCG00013298
TU54772 other downstream 482130 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 762574 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 1060417 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 1332334 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 1404875 30563368 ~ 30568219 (+) True AMCG00013417

Expression Profile