RNA id: TU54615



Basic Information


Item Value
RNA id TU54615
length 289
RNA type TUCP
GC content 0.59
exon number 1
gene id G43802
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29104289 ~ 29104577 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCCCCCAGGATACAGAGTTGTATATGTGGCACAATCTGAGGCCACACTCAGCATATGGCAAACTCCAACTCCGCAGCTCTCACCGAATGCACCTTTACAGCGAGATTGTAAAACTCTCCTCCCCCGAGGAAGAGACACCAACCTGTCACGACGAGTGTGTGCGGCACGCCGGCCTCGGTGAGCATCCCCTGGATGTGGCTGTTGAAGAGCGAGAGGCCCTGTCCCTTCCCGCTGTGGGGGttgagcagcagcaggagacGACCGGGTGTCGGCAGCATGTCGTACAGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54489 lncRNA upstream 365536 28738123 ~ 28738753 (+) True G43712
TU54481 lncRNA upstream 422115 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA upstream 422115 28680810 ~ 28682174 (+) False AMCG00013336
TU54444 lncRNA upstream 714329 28389689 ~ 28389960 (+) True G43673
TU54325 lncRNA upstream 1031490 28068646 ~ 28072799 (+) True AMCG00013317
TU54625 lncRNA downstream 45401 29149978 ~ 29151334 (+) True G43810
TU54612 lncRNA downstream 52122 29156699 ~ 29158493 (+) True G43799
TU54679 lncRNA downstream 72474 29177051 ~ 29178266 (+) False G43853
TU54680 lncRNA downstream 72474 29177051 ~ 29178266 (+) False G43853
TU54681 lncRNA downstream 72474 29177051 ~ 29178266 (+) True G43853
AMCG00013351 mRNA upstream 12682 29080000 ~ 29091607 (+) True AMCG00013351
AMCG00013350 mRNA upstream 35887 29067830 ~ 29068402 (+) True AMCG00013350
AMCG00013344 mRNA upstream 44649 29033142 ~ 29059640 (+) True AMCG00013344
AMCG00013346 mRNA upstream 75081 29022007 ~ 29029208 (+) True AMCG00013346
AMCG00013345 mRNA upstream 93014 29004045 ~ 29011275 (+) True AMCG00013345
AMCG00013352 mRNA downstream 10876 29115453 ~ 29121435 (+) True AMCG00013352
AMCG00013356 mRNA downstream 45665 29150242 ~ 29156585 (+) True AMCG00013356
AMCG00013363 mRNA downstream 463912 29568489 ~ 29573439 (+) True AMCG00013363
AMCG00013365 mRNA downstream 481674 29586251 ~ 29627558 (+) True AMCG00013365
AMCG00013364 mRNA downstream 544924 29649501 ~ 29667051 (+) True AMCG00013364
TU54454 other upstream 615506 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 1168351 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 1513471 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 1689003 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 1945568 27158302 ~ 27158721 (+) True G43434
TU54772 other downstream 536046 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 816490 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 1114333 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 1386250 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 1458791 30563368 ~ 30568219 (+) True AMCG00013417

Expression Profile