RNA id: TU54654


Basic Information

Item Value
RNA id TU54654
length 1124
lncRNA type inter_gene
GC content 0.49
exon number 5
gene id G43834
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29115222 ~ 29117961 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAGTACACTAATGGCATTACAAAACACCATACAATATCTGAATCAGGGGTGCATTGCTAACCTACACCAAAACAGACTCCTCACCTGGGGGCATACCGGGCATCATTGGGGGCATCCCGGGTCCAGGGGGCATCATCCCACCCATTGGCATCATACTGTGAGGAacaatatttttccatttagcTTAGGACTACAAAACACACAAGGCTGCCAGTCACATGAAAGTGGTGCCGTTTTGAAAACAGCATAACAACATCACTTCTATACTAACACAAGGGCTTGACATGATGCTCACTTACCCTGGGGGCATTCCGGGCATTACAGGGGGCATACCGGGCATCATGGGAGGAACTCCAGGCATCATGGGGGGCATTCCTGAGAAGTTCCCCGGTGGCATTCCCGGAGCCCCGGGCACGTGGGGCATTCCCGGCTGGGTCATGGGGGGCATAAAGCCTGTCTGGGGCTGCATTGGTTGTTGCTGGAAAGAAGGACCCGGCTCTTCTTCCTCCTCATAATCATCCGAATCCTCCTGgttgttctgtttctttttctgacTTTCAGcttgtgttttttgttctagtACCCGTCTCCTCTCTTCCATGTCCTTTTCTGGAATACCTTCCATGCCATAGATCTCCAATTCAATGTCCGTCCTGCCAGGTATCGCATTGGGAACACCATCTATTGTTTCTTTGTGAACCTGCATACAATGAATAGCTAAGCCCGGGCCCGTGTATAGTTTTTTATGACATATATGACACTTGAAGTGTTTTGCTTTCTGGTGCTGTATAAGAATCTTCTCGTCGTCAAAATCTCTGTTGCAGTACCTGTGCAGTTTCAGCACCACGGCTTcatctgcttcttcttcttccttcccATGGTTTGGGTTTAGTCTGAGCCGGAGAAAATGCACAGAGAGAGGCGAGGCGAGGCGAGGCGAGGCGAACACACCGCCTACAAAGATAGCAGAGAAAATGGCGTCTCCGGCCCGACAGGCTTCTCACTCTTCCCACAATCCTCCGCGGCAGATAACCATTCAACCCCCTGACTTATCAGTGGTGGAAATGCGCGGACCGTGTGTCAGtcaattacatataattacttTAAACAATACTTAGTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54497 lncRNA downstream 347870 28676824 ~ 28767352 (-) False G43714
TU54511 lncRNA downstream 376449 28737957 ~ 28738773 (-) True G43725
TU54496 lncRNA downstream 393056 28676824 ~ 28722166 (-) True G43714
TU54508 lncRNA downstream 397282 28716291 ~ 28717940 (-) True G43724
TU54463 lncRNA downstream 624126 28488842 ~ 28491096 (-) True G43691
TU54650 lncRNA upstream 1412 29119373 ~ 29121319 (-) True G43831
TU54758 lncRNA upstream 379749 29497710 ~ 29499573 (-) True G43919
TU54896 lncRNA upstream 808422 29926383 ~ 30028230 (-) True G44034
TU54893 lncRNA upstream 821187 29939148 ~ 29944587 (-) False G44034
TU54897 lncRNA upstream 832879 29950840 ~ 30010700 (-) False G44034
AMCG00013353 mRNA downstream 1175 29098987 ~ 29114047 (-) True AMCG00013353
AMCG00013347 mRNA downstream 51982 29061888 ~ 29063240 (-) True AMCG00013347
AMCG00013349 mRNA downstream 118842 28991437 ~ 28996380 (-) True AMCG00013349
AMCG00013348 mRNA downstream 126217 28974690 ~ 28989005 (-) True AMCG00013348
AMCG00013339 mRNA downstream 337748 28771933 ~ 28777474 (-) True AMCG00013339
AMCG00013355 mRNA upstream 9510 29127471 ~ 29155513 (-) True AMCG00013355
AMCG00013354 mRNA upstream 43269 29161230 ~ 29173911 (-) True AMCG00013354
AMCG00013357 mRNA upstream 60367 29178328 ~ 29202068 (-) True AMCG00013357
AMCG00013358 mRNA upstream 115211 29233172 ~ 29238257 (-) True AMCG00013358
AMCG00013359 mRNA upstream 164703 29282664 ~ 29304026 (-) True AMCG00013359
TU54456 other downstream 647316 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 1042435 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 1546071 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 1822149 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 2557898 26556354 ~ 26557324 (-) True AMCG00013264
TU54700 other upstream 135435 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 888803 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 963075 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 963075 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 1047856 30165817 ~ 30169136 (-) False AMCG00013390

Expression Profile