RNA id: TU54700


Basic Information

Item Value
RNA id TU54700
length 921
RNA type TUCP
GC content 0.49
exon number 1
gene id G43869
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29253396 ~ 29254316 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACATCTTTGACACCAGAGACCATTTCCCGTACGGAGTCGTAAATTTCCCCGCTGGCTCGGCATTCCGTCGCGTCAACACTTCTGACGGCAGAACCGCGCCTGACGTTTTCAATCTCACAGCATCTCGGATTGGTCTGGTGGCAAGACGTGACAGATGACAGGAAGAACAAAGCAAGCTGGGATCCGGTGACTCGGCTGCTTGACTGCTGGGTTGCCAACTCTGGTGGGCTGGTGTCGGCAGGTTGTACCCGTATGACTTCATGCGACTCTACTCCTACGCTACTCTACTCCTACGctacgctactccactgctccgctccctccactggctcccgataccgacaagcattcagttcaagactttgaccctcacctaccgctgtctcgaccacactgcaccaagctaccttcagaccctcgtctctccatacatcccctccagaccactgcgctcctccagcgccagaagactaactctgcctcctctccactctccttcctccagagccgctccttctcatccctggaccctaaatggtggaacgacctgcccaccgaagtcaaaacagcagagtccttgacctccttccggcgcttactcaagacacatcttttcagacagtacttgtaatattagtccttttatccccgctagatagcactttacagttttattatgcttcttgcgtttttgattgttttcctccttgctccctttcccgtagcccttgtctgtgaccctacatcttgacagcacttagcttttaccgtccaggatgtaggacctaaCTTACTGTACCTgactgtgtaaattgtaaattgtaaattggaaaatgtattatattttgaattgctatgttttaggtagattgaatttgtaatgactgATGCCTTGTAcgtaactgtatttttgaactttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54650 lncRNA downstream 132077 29119373 ~ 29121319 (-) True G43831
TU54654 lncRNA downstream 135435 29115222 ~ 29117961 (-) True G43834
TU54656 lncRNA downstream 135435 29115222 ~ 29117961 (-) False G43834
TU54497 lncRNA downstream 486044 28676824 ~ 28767352 (-) False G43714
TU54511 lncRNA downstream 514623 28737957 ~ 28738773 (-) True G43725
TU54758 lncRNA upstream 243394 29497710 ~ 29499573 (-) True G43919
TU54896 lncRNA upstream 672067 29926383 ~ 30028230 (-) True G44034
TU54893 lncRNA upstream 684832 29939148 ~ 29944587 (-) False G44034
TU54897 lncRNA upstream 696524 29950840 ~ 30010700 (-) False G44034
TU54905 lncRNA upstream 785889 30040205 ~ 30061634 (-) True AMCG00013384
AMCG00013358 mRNA downstream 15139 29233172 ~ 29238257 (-) True AMCG00013358
AMCG00013357 mRNA downstream 51328 29178328 ~ 29202068 (-) True AMCG00013357
AMCG00013354 mRNA downstream 79485 29161230 ~ 29173911 (-) True AMCG00013354
AMCG00013355 mRNA downstream 97883 29127471 ~ 29155513 (-) True AMCG00013355
AMCG00013353 mRNA downstream 139349 29098987 ~ 29114047 (-) True AMCG00013353
AMCG00013359 mRNA upstream 28348 29282664 ~ 29304026 (-) True AMCG00013359
AMCG00013360 mRNA upstream 185683 29439999 ~ 29440470 (-) True AMCG00013360
AMCG00013362 mRNA upstream 190131 29444447 ~ 29445872 (-) True AMCG00013362
AMCG00013361 mRNA upstream 191625 29445941 ~ 29449481 (-) True AMCG00013361
AMCG00013373 mRNA upstream 491911 29746227 ~ 29794126 (-) True AMCG00013373
TU54456 other downstream 785490 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 1180609 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 1684245 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 1960323 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 2696072 26556354 ~ 26557324 (-) True AMCG00013264
TU54894 other upstream 752448 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 826720 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 826720 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 911501 30165817 ~ 30169136 (-) False AMCG00013390
TU55119 other upstream 1033976 30288292 ~ 30290867 (-) False AMCG00013405

Expression Profile