RNA id: TU54727


Basic Information

Item Value
RNA id TU54727
length 347
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G43895
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29434050 ~ 29446698 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTTCAAAACATTCAGGGATTTTCAGAGTGCCGTCGAAACACTGGGTCACGACAGGGTACCCGCAAttcttttccttgtttttgcaGTAAAATGCCACGTGATCAGAGTGCTGCACCTTCTTCTGGGGCAGATCTTCAATCCATATTTTTTTGGCGTTATAAAAGATCCGCCCCCTTTGAATACCAACGATGCAGGATGCTGgaaagagaatgaaaataaacaaacagaggaCAGGTTTAAggttaaagaaataaatgctcAGTCCGTCAAGAGGGGGTGCAGTCTTCTCCAGCACCCACCTCAAAAGTCATCATTTAGTTTCAGTCTGATCCTGTACCCCATCTC

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54684 lncRNA upstream 231329 29179098 ~ 29202721 (+) True G43855
TU54679 lncRNA upstream 255784 29177051 ~ 29178266 (+) False G43853
TU54680 lncRNA upstream 255784 29177051 ~ 29178266 (+) False G43853
TU54681 lncRNA upstream 255784 29177051 ~ 29178266 (+) True G43853
TU54612 lncRNA upstream 275557 29156699 ~ 29158493 (+) True G43799
TU54935 lncRNA downstream 616710 30063408 ~ 30065492 (+) False AMCG00013382
TU54949 lncRNA downstream 642105 30088803 ~ 30090115 (+) False AMCG00013388
TU55048 lncRNA downstream 895771 30342469 ~ 30343923 (+) False AMCG00013399
TU55072 lncRNA downstream 979926 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 1008974 30455672 ~ 30457671 (+) True G44182
AMCG00013356 mRNA upstream 277465 29150242 ~ 29156585 (+) True AMCG00013356
AMCG00013352 mRNA upstream 312615 29115453 ~ 29121435 (+) True AMCG00013352
AMCG00013351 mRNA upstream 342443 29080000 ~ 29091607 (+) True AMCG00013351
AMCG00013350 mRNA upstream 365648 29067830 ~ 29068402 (+) True AMCG00013350
AMCG00013344 mRNA upstream 374410 29033142 ~ 29059640 (+) True AMCG00013344
AMCG00013363 mRNA downstream 121791 29568489 ~ 29573439 (+) True AMCG00013363
AMCG00013365 mRNA downstream 139553 29586251 ~ 29627558 (+) True AMCG00013365
AMCG00013364 mRNA downstream 202803 29649501 ~ 29667051 (+) True AMCG00013364
AMCG00013367 mRNA downstream 251134 29697832 ~ 29710210 (+) True AMCG00013367
AMCG00013368 mRNA downstream 274947 29721645 ~ 29724010 (+) True AMCG00013368
TU54615 other upstream 329473 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 945267 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 1498112 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 1843232 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 2018764 27385665 ~ 27415286 (+) True AMCG00013298
TU54772 other downstream 193925 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 474369 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 772212 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 1044129 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 1116670 30563368 ~ 30568219 (+) True AMCG00013417

Expression Profile