RNA id: TU54893


Basic Information

Item Value
RNA id TU54893
length 4228
lncRNA type inter_gene
GC content 0.51
exon number 5
gene id G44034
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29926383 ~ 30028230 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTAAAGTTTATTTACACCATATTACAgtcatataaaaatgaataaaaggtCACAGTCACTTATGTACATTGTGGTGAAAGACAGAACTCTGGACAAACCAACATTGATAAAGTACGCATTGTAACAGGAGAAAGTGTCTAGAAGTTGAAAGTGCTTTGGGAGTCTTGGACCTGGAAGGCAAAGCCCTCTTCTGTGGCCTCTGGGACGACACACtggtcctcctcctcctCCCAGAGAAGTACTTCTCGATCAGGTTGAGCGAGGCCTTGTAGACCATCTCGTTCTCATGGGACTGCAGGGCCTCGATCCGGTCCAGGCCGCCACACTCTTCGATCATCAGGCACAGCTTCTCCGTCTCACCCAGCTTCTCACCGGCCTGAAGATGTTGGAGATGGCATCCAGGATAACCAGGATGGTCTTGCTGTCCTTAGTAGAGAGGAGGTTGAGCAGCGGTTCCAGGATGCCCTCCTGAACCAGATACACCACCTGCTCCACAGAGCCCCCACTGGTGTAGTTGGTTATTGCCCACACAGCCTCCTTCTGAGTCTTGTAGTCACCCTGAATGAGAATTGAGAAGTGTTAGGACAACAGCAGACTAATGTGGGGAGGaagattaaacatttactgCATCTGTGGCAATCCCTTCAAGAGATTTTTCTGGCCAAAAGGAAGCTGGGGGGGGATAAATCCACATCCACTGAAAAGGCACCCACCCGTCGCAGCACCTCCACCAGGTGTGGGATGAGCCCGGCGTTGATGACCTCCTGGATCTGGCTGCCCCTCCCAGCCGTGACGTTGGACAGTGTCCAGGCCGCCTCCTTCTGGATGTTGTTCTTGTGGTGCCGCAGCAGCGGTGGGAACATGGCCAGGGCCCCGGCGTCCAGCACCGCCTGCGTCTGCTCGTCCGTGCCGGTCACGATGTTGCCGATTGACCTCAGCGACGGAGTCTGGAGACGATAGATTAAATCATTGGAAAATGGTCGACAAATCAGGAGTGCAAACAGGGTTCAGTTAAGAGCTCCGAGTCAAAACCAGCAAACACCCCAGGGGCAAGACTGAGGGACAGGAAGGGCAACTAAACCACACAAGACTGTGCATTGTGGGAGTCATGCGAGCTAGACGGAGCCACGTACCACGATGCTGAGCTCTCCGGACCCGAGCAGCTGCACCAGCCGCGGGATCAGGCCGGTCTGCATCACCACCTGGATGCGGTCGTTGGGCCCATCCGTCAGGTACGACACGGCCCAGCAGGTGTCGGCCAGAACCTCGCGGTCGTCGTGGTGCAGCAGCCGCACCAGTGTGGGCAGCACCTGCTGCACGGCTGCCAGCGGAGGCGCCGGGTTCTTGTTGCGGCACAGGTTGGACAGCGTCCAGGTAAGGTTGCGCAGGTAGCCAGACTGCAGGAGGGAAGGAAGCAAACTCGTCAAGAGCCAATTTAGTGTACGTCCGTATTGAACATGGAAAATTAGAGTATGGAATTGAGTGGTGTTACACTACCATCTAGTGGCTCTACGTAGCAACTGCAAATGAGGAACTCCATTTAAAAGAGCACAGAAAATGCTTAAGGACATTTCCTCCTTACCCAAGGGGATGAATTAAGAGTTGCACAAACCACCTTAAGTACTCCCCTCAGGTTAGGAAAACCACTTCAGTCTCTTGCGTTTCATCTTTCTTCAGCCAATCGACTGCAAACTTACCGAGCACTGTGGGCCGCTTACCATAGAAAGTGCTCAAGAAAATGGCACAGACAAAACCAACTAGTCTGAAGAAAGCATAGTTTTAATTGACAAATACAGTAAGCTAAAATATGGAAACTGCTAGATTTAATCCTCAGGTGACAGGCACTAAGCTGTGGGATGACATAACGGAGGCTGTAATTAAACACTAAACATTGCCGACTACTGAAATGTAATACTTACATTTACAAGTTAAGAAACtacatatacaaaacattaatattttcaaacCTACTTTATAAATAGTGCATTGGAAATACAAAGTGTGGTTTTATAACTACTTGATACTTTGTCATTTAAAACCGGTTTTAATGCAGCTAATCGAGAGGTTTATTAACTCGTTTGTTCTACATGCGAGAGACTAGACAAGGAATACCTTGTTCCCTGACAGTTCCAAATGagttccccccctcccccatcccatCATCCAGTGTATCCAAAGGATTCTCCAAAAACCCTTGTGAAGTACAGCTTCATCTTCATTTTCAATGCGTCAACATTTAAACAGGCTTTAAGGTACCAGAATTacctgcttttttccccctccccctttttaAGTGAAAATTACCCTTAAAGTTGTTTTATTGCAACCATTAACTACCTTAAGGGAAATACAGGAGTATATTCACTTGTGATCAACTTTAGTAGTATTCCTTAACTTCCCCTTAAGAATATGGGACAAGTTTTATGCAACACTTCAACTTAAGTACCAGTTAAGATGAAAACCAAGGGTGAGATTCACTCAAGTTGGTTTTATGCAACTTGGGCACAGACAGGCAGCGCGTGACTGGGCAGGACACCGGTGAAGCTCTGGGTACTTACAGAGAACACAGACAGCTCAGGCACGGCCAGCAGCGCGAGCAGGGGCTCGATGGCACCGTGCTTGATGACCTTGTCTCTGTAGGAGGACCCATCCCCTGTAAAGGAAGGAAAATCAAAATCAGACCAATGCACAACACCAGGGTTTGACTGGCTGAACTGCAAAATCTTtaaatgaaagtttttttttttaaatgcactactTGTAGACAAAATGAAGGAGAGCGCGGAGCCAGTTAAGGGTCAGACTGGGAGAGATCACAGGAAGAGGCAAAAAGAGCATCAGGAAGAGCAGAGACACCACCCCACCCAAGTAGGTGATCGCTCTATACTAGTGGTCTCGAACCCTGCTCCTGAAGAGCCCCCCATCCACCTAAATTTCTAAACTGGGAACACATTGGAGCAATTAAACCCAGGGATTTCTTGACTCAAGAGGCTCAAGGTGTTCGGAGGATTGCTCCATTTTTAGATGACTCCCTTTACCACAAAACCTGCTTAATGGTTTTGAATTAACTACTTTCAGGGGGTTCAAAattggtgatagaagggtgacctccaAAACTAGCTGGattaggggctctccaggaccaggactggagACCAGCACTCTATAGAGCACAAGGAATTCAGACTTCAGATCTGACTTGCTATCAGGGGGGGTTTATCAGCACAGGCTCACCAGCGATGTTGCCCAGGGCCCAGACCGCCTGCTCGCTGATGTGGGGGTGCGGGGAGGGGACCAGGCTGATAAAGGCAGGGATGGCGCCCCCCTCCACCACGGCACGAGTCTGGTCCGAGGTGCCGGACGCGATGTTGGTCAGTGCCCAGGCCGCCTCGAACTGGATGGGGGGGCACTCCGACACGCCCAGGAAGCCCACAAACTTCTCGATCAGCCCGGCGCTGATGATGCTGTCGATGGGCGGGTGCCTCTCGCGGGAAAGCAGCTTCCTGCTGCCTGGGTGGCCTGCAGCTGGAGGTCCAGGTTGTTGGCATTGACTCCATTCACAATCTCCTCCACCGACCAGTGTGGGGCGCCTGGCGGTTCTGGTTCTTCTCCTGCAGCGGCGAGGTGGCGTCGTCCGGGAAGCTGCTGACGTTGCGCCGCTTGAGGATCTGCTCGTCCTTCTTCGCCTTCCGCAGCTCCACGTTCACCTCGATGCGGCGCCGGCGCAGCTCCTGCGGGGACAGCGGCGTCAGACACGGCAGCGGAGCGGACCgagaccccccaccccaccgaCACAGTGGACGCGCCGGTCACTCACGTTGGCGTCCTTGCCCTTGTTCTTGAACTTGTTCAGGCGGACCATGTTCTCGTTGGCAGCGGCGGACATGTTTCACACGTATAGAGCAGACGAGCCGATACCGCCGGGAATCCAACAGATCCTGAGAAACGGGGAcataagaacaaataaacacgTCGCTCAGGAGCACTGGCGCTGTTCATTCGGCCCAAAGAAAGCGAGAGACGCCCGGCTTACCGTAGATTACATCATcaccattaaatattaatgcagTTCTCCAATTAGAGACACAGGTGATGTACTtacaaaaaacactgctttaatactcacaataatatacacaaacgttcaaaaatgacaaaagaaaCCTCTTATTTTAACGAAATAAAGCCCAGCTGAGTGGAGAGCACTTACTAGTTCCTCGATCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54758 lncRNA downstream 439575 29497710 ~ 29499573 (-) True G43919
TU54650 lncRNA downstream 817829 29119373 ~ 29121319 (-) True G43831
TU54654 lncRNA downstream 821187 29115222 ~ 29117961 (-) True G43834
TU54656 lncRNA downstream 821187 29115222 ~ 29117961 (-) False G43834
TU54511 lncRNA downstream 1200375 28737957 ~ 28738773 (-) True G43725
TU54897 lncRNA upstream 6253 29950840 ~ 30010700 (-) False G44034
TU54905 lncRNA upstream 95618 30040205 ~ 30061634 (-) True AMCG00013384
TU54958 lncRNA upstream 144216 30088803 ~ 30090147 (-) True G44086
TU55012 lncRNA upstream 228905 30173492 ~ 30175306 (-) False AMCG00013390
TU55141 lncRNA upstream 362439 30307026 ~ 30310766 (-) True G44230
AMCG00013376 mRNA downstream 3978 29931650 ~ 29935170 (-) True AMCG00013376
AMCG00013372 mRNA downstream 135905 29796583 ~ 29803243 (-) True AMCG00013372
AMCG00013373 mRNA downstream 145022 29746227 ~ 29794126 (-) True AMCG00013373
AMCG00013361 mRNA downstream 489667 29445941 ~ 29449481 (-) True AMCG00013361
AMCG00013362 mRNA downstream 493276 29444447 ~ 29445872 (-) True AMCG00013362
AMCG00013385 mRNA upstream 46713 29991300 ~ 30002882 (-) True AMCG00013385
AMCG00013384 mRNA upstream 98003 30042590 ~ 30047619 (-) False AMCG00013384
AMCG00013386 mRNA upstream 136027 30080614 ~ 30083441 (-) False AMCG00013386
AMCG00013389 mRNA upstream 147275 30091862 ~ 30100704 (-) True AMCG00013389
AMCG00013391 mRNA upstream 173213 30117800 ~ 30126501 (-) True AMCG00013391
TU54700 other downstream 684832 29253396 ~ 29254316 (-) True G43869
TU54456 other downstream 1471242 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 1866361 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 2369997 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 2646075 27273229 ~ 27293073 (-) True AMCG00013295
TU54894 other upstream 62177 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 136449 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 136449 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 221230 30165817 ~ 30169136 (-) False AMCG00013390
TU55119 other upstream 343705 30288292 ~ 30290867 (-) False AMCG00013405

Expression Profile