RNA id: TU54897


Basic Information

Item Value
RNA id TU54897
length 1270
lncRNA type sense_over
GC content 0.46
exon number 3
gene id G44034
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29926383 ~ 30028230 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcctttttttttttttattcaaaggcCATGCACTGCCTTCAGTTAAGATTCGAACATATCACTTTCAACATTTACAGTGTAAATCAAAAGGTTTGCATTTCctagtacaaaaaaaaattaactagTTACGGAGGaatgtaacaaattaaataaaaatgaaagtgcaCCTTCACTATTGCTGCACTGCAGGCTCCATTATGGTTTATTTAAGAGGCTTCGAATGTTAAATAAGTTTCAACCCTGTTGTAAAAGAAACAGTACAAGTCTGAATAAAGAGTTCTGGacttaaagacaaaaaaaaaacaaaataaattacttctACAGAtcgagtgtgcgtgtgtgttttactGGGGGAATGCGGGGGGCATGGGGTAGCTGACCATGGGCTGTGGTGGCGGttgtggctgctgctgctgtgggtTAAATGGAAACTGTTGGTGGTTCATGCCGTTCTGGGCTGTGGCCTGACCGGCCGCTCCAAACGGCTGGTTTTGGAAATTCTGGTTCCCGAATGTGCCGGGCTGGTTACCAGCGCCATAGCTGGACTGTCCACTGTTGCCATAGCCGTTGCCATAGCTATTGCCACTATTCTCAAAGTTGGCTCCCCCATAGCCTCCGTTCTGCGTCTTTGTGCCGAACACTTTCTTTGGTCCGCTGCCGAAACCCCTGTCATTATCCCTGTCCCTAAAACTACCGAAATCCCTCCTGCCTCCACCTGAATACCTATCCCGACGGTCATCTTTATAGCCACCTCTACCTCTGGAACGACCTCCTCTGTCTTCCACCATCTGGATGAGTTTGGGGTTGATGGCCTGATTGGCCTCACGGAGCACAGAGATGAGGTCGTTGGCTTGTTTCATGTTGCCAGGAGTAAAGAAGGTGTAAGCGGTGCCCGTTTTGCTACTGCGGGCAGTTCTCCCAATGCGGTGGATATAGTCTTCGGAGGAGTTAGGGTAGTCATAATTGATGACAAATTTCACATCTTCCACATCTGTAAAGTGTTGCAGTGTGGCAAAAAGGAATGCACAAGATTTTGCACACCACAACAGCCAGACCAAAAACACAAGTTAGCAAAAACCGGGACAGCATTTAAGACGCTTAGCAGGGCTGCAAAGAATAGCGTtaacacaattgttttgttttttttactccaTGGGAATAGTACTGTGGGAAAAGAGAAACGATGCACACTCCATTTGCTTCGGACCTTAAAACCCACCTGATCCCAGTCTCCctcccatttaaaaataaaaaaatggggggggggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54893 lncRNA downstream 6253 29939148 ~ 29944587 (-) False G44034
TU54758 lncRNA downstream 451267 29497710 ~ 29499573 (-) True G43919
TU54650 lncRNA downstream 829521 29119373 ~ 29121319 (-) True G43831
TU54654 lncRNA downstream 832879 29115222 ~ 29117961 (-) True G43834
TU54656 lncRNA downstream 832879 29115222 ~ 29117961 (-) False G43834
TU54905 lncRNA upstream 29505 30040205 ~ 30061634 (-) True AMCG00013384
TU54958 lncRNA upstream 78103 30088803 ~ 30090147 (-) True G44086
TU55012 lncRNA upstream 162792 30173492 ~ 30175306 (-) False AMCG00013390
TU55141 lncRNA upstream 296326 30307026 ~ 30310766 (-) True G44230
TU55124 lncRNA upstream 373986 30384686 ~ 30455606 (-) True G44213
AMCG00013376 mRNA downstream 15670 29931650 ~ 29935170 (-) True AMCG00013376
AMCG00013372 mRNA downstream 147597 29796583 ~ 29803243 (-) True AMCG00013372
AMCG00013373 mRNA downstream 156714 29746227 ~ 29794126 (-) True AMCG00013373
AMCG00013361 mRNA downstream 501359 29445941 ~ 29449481 (-) True AMCG00013361
AMCG00013362 mRNA downstream 504968 29444447 ~ 29445872 (-) True AMCG00013362
AMCG00013384 mRNA upstream 31890 30042590 ~ 30047619 (-) False AMCG00013384
AMCG00013386 mRNA upstream 69914 30080614 ~ 30083441 (-) False AMCG00013386
AMCG00013389 mRNA upstream 81162 30091862 ~ 30100704 (-) True AMCG00013389
AMCG00013391 mRNA upstream 107100 30117800 ~ 30126501 (-) True AMCG00013391
AMCG00013393 mRNA upstream 115997 30126697 ~ 30153358 (-) True AMCG00013393
TU54700 other downstream 696524 29253396 ~ 29254316 (-) True G43869
TU54456 other downstream 1482934 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 1878053 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 2381689 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 2657767 27273229 ~ 27293073 (-) True AMCG00013295
TU54953 other upstream 70336 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 70336 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 155117 30165817 ~ 30169136 (-) False AMCG00013390
TU55119 other upstream 277592 30288292 ~ 30290867 (-) False AMCG00013405
TU55155 other upstream 389187 30399887 ~ 30423025 (-) True G44243

Expression Profile