RNA id: TU55124


Basic Information

Item Value
RNA id TU55124
length 3857
lncRNA type sense_over
GC content 0.50
exon number 2
gene id G44213
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30384686 ~ 30455606 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCATTTGTACCCTTATAGAAAATACCCcatacacacgcacaaacaTACCGTTTAgagcattaaaaaacacagaaaacactccAGTGCCAAAAGTGGAGGTGAAGTCAGCCATGTTTCTTCCTCAGCGCCAGGCAGCTCTTCGTCCACGTCATGGGCTGGAGGGCTCAGCAAACATGCCTGGGCCCCCAAAAATAACTGAAAGCAAGGTGTGCACCCCCTACTGGAGCACCAGGCACCATCAACCCCTTCATAGAGACCCAGGGTGAGAGTTTACAAAGCTGCCctcttaaatacattattccaaGCCCAACGGTCAGTTTTCCACACTGAAGACACTTCTTGGTCCAACGAGTGGTTTGAAACAAATACACCCTTGAGATCGGAGCAGGTTAGATCTGGCCTTTATCAAAAATGAACCCACATTACAGCGGAAGAGGATGTTCTCTCCTGCCCTGGACGCCCCTCTGCCACAGCGTGAGGACGAGGAGAACGATGAAGAGAAGCCATTCAAACGGCAGAACGACCATCCGTGACAATCgtaaaaattactttttattttaaatagaagaCATCAACATTTTCTATAACTCCTTTATTACAAAATTCACAACTTTGACAAGGTGGCGTTTACAATGTAGTTTCATGACATTTCTTggttttagatttttctctCACTTCCCATcttttccttctccttcccGTCAGGGGCCATCGAAATAAGTTGTGCAAAACAATGCCAGTCGTCCATTCTGAAGCACCATCCGTCCACGTAAGAAACAATGCAAGCAGGTATCCTTAATCTACATCCTCTCCCACAGTCTATCATCATTTAGTCAATCTTTACACAGGTGCACAGCTTTAGCAATTAAAGCAACAGTCGAGAAGAGATTCCTGCTCATCCCGGAGAGTAAATATAACCCGAAGGATCTCGCAGACAAATCCTCCTCAGCTGGTGAAACAAGAGGTTCAGAGAAacgaaggaaaaggaaaaggaggaaCGAACGAGACGCAGCTCAAACCCTCCTCCGGGACGAAAACCGCCATCAATTAGCCCACACCCTGGGGTGCTACTCCTCAACAGCGACCCACTGTGGGCACAGACTGCGGTGGGATTGCTACCTTTCCAGGATCAGTCACCATAATTACTCTAGGAGTAgcggagggaaaaaaaaaaaaaaaaaaaattataacgtttttctttttaaagagtTCATTGATGTCCCAAAAGTCTCCACAGAAGGGGTGCACGACTTCCCAGATTTCCAACACAGAAATTAATTGAGGTACCAGAAACACCAGCGCAGCAGCATGTGTGAACCTCCCGCGTGTGGCAACCTctcatttctttttctcttaAATATGAAGAATGTAATTAATggcagtacattaaaaaaataaaaactgaaaaccgGAAAGTCATGAGGTGGCGTCCACGTCACCGGACCTCGGTGCTGGCCcggcaaaaataaaataccaactCTAGCTCACTGGTACGGTtagaagtaaacaaaacaagtttccATTGGAAATTGTGTAAACAATCGCATGTGTAATAAACACTGTCCGGCATGCGGGGCGACACGGCCAGTTGTCGGTTAGTGTCTGCGGCTCCAACCCGGTGAGAGACCATGGACAGACCACGGCTCCACTCCTTGCATAAAGTGTGAGAGGCTCCTCTGGTCCGGCCGGCGTCTGCAGCCAATTCAGGGCGACCGCTGGGCGAGCCTCCGGCCAGGCAAGGGCCGTGTGTAACACAACAACagcaccacaacacaacacagcacagcaccagtGCACTACGCTGCCGAGAGCCTGTGTCGGCAGAACGTCTATGGTTTACTGCGgaaatctgaaataataataatacgtacGGGTGAGGAAAATAAAACCGTTCAAGTCATCAGAACGCACTGGCGCGAAAACGCTGCATTCAACCGCAAACGCACAACCAACCGACCGCATGTAGgaacgaacaaacaaaaaaaattgccaGCAAGAGTCAACAGAAAAatctttgaatttttttttatgtcggtttgattatttttttgttggtttcatttttttttttttctaggtaaaatatattaatagtaaATGTCTTTCCACACCGGCCCCTGAAGCGACATCTGCGCCACGATGGGCTCGCAGGGAGACGCGCAGCACCGGAAAGGACGAAAGTTGCCATGATTTCAATGTCCCCTGGTTCGTCAGCTGAAGCCCGTTACGATATTTACCGGTGATGTGCAGTCAGTAACTCAGTCACGATtgacagtgtgtttttaaaatacaaagtcaGAAAAGCGATCCTCCCCTCTACGGACCCCCTTGGTTAGTGTATCAATAAACTGATAGAACAACAGGGGGTCTTATGACATCAGAAGACCAGAAAGATCTCGAAAATGGATCCTGCCGCCTGTTCCCTCCCCGCCACCCCCCAACTCATGAACAAGATCCTGTTCCAATGCTGAGCCCCTTCCCCCCCAGGCTGGAGCTCCATGGTGCCGCTGTCTGATCAGTCTGGAGCCCCGCTCTCTGGgtcgctctgtgtgtgtgtgtgtgtgtgtgcgtgtgtatgagGGCAGAGATGACAGAATGACAGCCCCCCACCCCGGAGAGACAGATGAAGTGTTATTTAGGAAGCCGCTGTGCAGAGGGACGGGACTCTACTCTAAAACGAATGAGATGCGGTTAGGGGTCTCCAGCCTCCACCTCCTCCCGGTGGGGGCGCTGGCCAGCGGCGCTGGGCTGGGGGGCGCTGTGCTGTTGTTAGTGATTTTAATGGGTTCAGATTGACAGTAAAGAGGGTTTACCAGCAGactgggcagcagcagcagcccagaGTGGAGCAGCTGGTGGAGCTCAGAGGGGACGTCCTGGGAAATTAACTTCTGAGCAAATACAACAAGAGCAACACGGggaaagaaagtaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaagaaaaagaaagaaaaagaaagaaggggtGTAAGCTCCAGCACCCTCTTCTGGCCCAGGGCAGATAACAGgtcaaaaattaaataaaaatataagtaCATTTCTCACAATGACCAATCTACAAAGCGTGAGAACGGACTCTATTGTGCGTGTATGCGTTTGCGTGTTCATCGTACTGCACACCACTGTGGGTCTGTCCCCCGGCCCGGTTTCCTTCAGTGGGTAGAGAGTTCTTCACAGGAGTTTATTCTTTACTGCTCCTAGAGAAATAAAAACCTTCAAAAGAGATAGTCTGAGGGTCAGCCGTTTCTTTCCTGATGCTTTTCGAAGCGATTCCGTCTCCCTTTTCTCCACAGCTGACGACACAGACATGCCTTCGCATCGCGACCGCCGTGATGCTGTCGTTTCACCAATTCCTGCTGCTTGACTGGATGTTTTGGCGACGGGTTGTGCGTTTTCCTCAGGGCGCTGCTGGCGGGAGGGCAGTCCTGCCAGGCTGGTGTGTGCCTGCGGGCAGCAGGGCGGTAAGGCAGTGCTGTGGGCCTCCCGGTCTGCCAGTGCAGCGCCAACCACACCAGCCCCCGGCACACGCCCACACCTCccagtcagtgtctgtgtcggtgtgagtgtatgtgcctgtgtccatgtgtgtgtctgtgtgagtgtcagtgtcagtgtcagtgtgagagtgtcTGAGTGTCTGAGAGTGTGCCGCTGCTGCCCCACCTGTTTGAGTCTCTTGACCTCATGCTCGAGCTCCATCTCGCGGGTCCTGGCGTTGAACTCGGACAGGCTAGACGAGGAGCTCCTTCCCCGGCCTGGCCGCTCCGTCTCCAGCTTGAACAGCTGCAGGTGCTCCAGCTCCTTCCGCAGGTCCTCGATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55141 lncRNA downstream 73920 30307026 ~ 30310766 (-) True G44230
TU55012 lncRNA downstream 209380 30173492 ~ 30175306 (-) False AMCG00013390
TU54958 lncRNA downstream 294539 30088803 ~ 30090147 (-) True G44086
TU54905 lncRNA downstream 323052 30040205 ~ 30061634 (-) True AMCG00013384
TU54897 lncRNA downstream 373986 29950840 ~ 30010700 (-) False G44034
TU55187 lncRNA upstream 78365 30533971 ~ 30539317 (-) True G44261
TU55177 lncRNA upstream 84707 30540313 ~ 30542858 (-) True G44256
TU55180 lncRNA upstream 85062 30540668 ~ 30562691 (-) False G44256
TU55192 lncRNA upstream 95783 30551389 ~ 30552050 (-) True G44264
TU55183 lncRNA upstream 98175 30553781 ~ 30599051 (-) True G44259
AMCG00013403 mRNA downstream 44225 30333448 ~ 30340461 (-) True AMCG00013403
AMCG00013404 mRNA downstream 51986 30322265 ~ 30332700 (-) True AMCG00013404
AMCG00013405 mRNA downstream 94198 30286642 ~ 30290488 (-) True AMCG00013405
AMCG00013390 mRNA downstream 200262 30167981 ~ 30184424 (-) True AMCG00013390
AMCG00013392 mRNA downstream 220208 30155262 ~ 30164478 (-) True AMCG00013392
AMCG00013409 mRNA upstream 1797 30457403 ~ 30464091 (-) False AMCG00013409
AMCG00013412 mRNA upstream 13024 30468630 ~ 30482326 (-) True AMCG00013412
AMCG00013411 mRNA upstream 27699 30483305 ~ 30486316 (-) False AMCG00013411
AMCG00013419 mRNA upstream 52345 30507951 ~ 30521671 (-) True AMCG00013419
AMCG00013420 mRNA upstream 68301 30523907 ~ 30533879 (-) True AMCG00013420
TU55119 other downstream 93819 30288292 ~ 30290867 (-) False AMCG00013405
TU55007 other downstream 215550 30165817 ~ 30169136 (-) False AMCG00013390
TU54953 other downstream 301341 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other downstream 301341 30081036 ~ 30083345 (-) True AMCG00013386
TU54894 other downstream 373986 30006764 ~ 30010700 (-) False G44034
TU55165 other upstream 121 30455727 ~ 30459331 (-) True AMCG00013409
TU55166 other upstream 21532 30477138 ~ 30478194 (-) False AMCG00013412
TU55168 other upstream 27913 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other upstream 27913 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other upstream 28110 30483716 ~ 30486331 (-) False AMCG00013411

Expression Profile