RNA id: TU55141


Basic Information

Item Value
RNA id TU55141
length 3705
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G44230
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30307026 ~ 30310766 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgttaaatgtatttatttgacaaattcactcacaaagaaaatacaacgTAAACCATCCAATTCGcaattgtttttacacaaataaataagaaaatagttCTTATTTACAATATGCGTCTGGGTTTGTTCCCAAAACcataaatgattttaaaatactcttaCATTCAGTTTTAGTCTCGCAGTGCAATATTGCAAAAGCAGTGACCGCTTCACTGTCAAAAATCGGGTCATCAGGTGAGAGAAAAACGTGCATTTGAAATCCTGAAAATGGGGCTTTAAAACGCATTCTGCATCCACACTCGGGCTGAAGCCGATGGGAAAAAGCTGGAAGTATTCGATCAAATGCAAAATGCTGCCCCTGGTTTTCCGCTCTTCAAACAGTTCAACTTTACATATATGCCTGCTCTACCAGTCCGTTAAGTATTACATTCAGAAACAACAGGGACTAAATTCGCCTCTGGAATACAAGGCTTAACAATTATACAAGTGTTTGGCGCTCTTGGTTAAGAAGTGGTTCAATATACTCTGGCAGTGCGGACAGTGTTGGAAATTGCGCATTTCAAGAATAAGAAACATTTGTGGCAAAGTATAGAACAGATAATCAGGTTTGAGTTTTAAAGTCAATACCCTCATCTCGGAGTGGTGCTGCTAAACTACGTTATTGGTTGgctacatatttaaataaatagcgctaaatgtatagtattttatttagagGCGTTCAAACAAtccaattttgaaaaaatatattacagccATGTAATGCACTGAGATCCGTGTGCAGACAGGACACCGCTACACTGAAGGTGTCCGGCCTTGACTGATCAAGAGATCTTCTCAGGACAGCAGGCTGGACGCAACGCATAACACCCCCGTATTATTAGACTCTCCAACTATATTCTGTAaaccaaacaatacaatacaaataacagaagATGCCAAGAAATAAACGCATTTtttgaaaccaaataaaaagttttttctAACACAACAATCACTGTGTTCTTACGAAAGTCTCTTTAAACGcattagagtgtgtgtgtaaaccaGTGCTTAAACTAATAAGCGCGACCCTGCAGAGCAATAACACAGCATTAAAactcacataaaaataaaacacctgtaGGAATGAACCTGGTTGTGACTGCAATGTCTCTTCACAGCACAGCGGTCGGGGGTCAGAGACTGTGCTGTGTCTGTCCTGCTGTGAGACCCCACTGACCAGCACATCACAGAGAAAATTAAACACCAACTGACAGCACAATTCATTCATACTGCCGAAAAAGTAAAAAgtgcacaaaaatgtaatattaaaaaacaaaacatgagcAGCGACGGTAATGAACTGAGCGGAGTTTTGCACAATTATATACGAATATATAGAGACAACACCAATAACtaattcacaaaaaatatattaaaataaaagatttctTTATATGTTCAAGTAGGCGCAACACAATGTTGTGTTTAAAGCCACAAATACCACAATCAAGTGAAAACAGTTGCGTGAGAAGAAAACTCACTTTCCTGGTCGTTCACTAATGGGAGTCGTTGTGCGGTTTAACCTCTGACATGAGGTCAACACAAACACCCTGAACGCTACACAACTCTCCCCACCCGGGTCCACAATCCAcccacattaaaaaaactaaacagtaaAGTCCAGGATAATGCGACACACTGTGCGTATTCATGTTTTTAGGACAATTTCTGTCTCCTTAACATCCACTGTCAACTGCGTCTCTCTTCAGCCTCTGCGCAAGGGCGACACCTAGCGGCCGACATGGGCAGCTGCGCATACAGCACAAAGCGAACAGTGACTATCTCTGTAGGGcatgataatattattattaataataataagactaaCATCCAGGATAGGAGGGGCCAGATAGGCGCAGAAGATAATAAAACACGAGCTCTGTGACAGGCAGACAAGCAGGCAGGAAGGGCTGGGCGCAGTCTTTAATCTCCCCTCTCCATCACACACACTGAGgatgcaatacacacacacagcctgccacccacacagatacacaaacacactctcacacacacatactacacaGCCTGTGAACTGCAGAGTATGTCACCGaatcaatgtaaacaaaatcaataatctAAATAAGACTCTGCCGTCCTACCGGTGTGTCATTGAGGGGCATCATCAGCACAGTGAACCCCGTCTGTGTCGTGTTAAGGAAAGTCACATGTGTCACATGTTTTAGGAGTCGAATCTGGGTCAGGGAGGAGTGAAGACACTGCAGTCACTGAAACGCACAAGACAAACCGAACTCACGTTCAGAATGAATGCAGCAGGAAATGTAGGAGcgcatgtttaattaattaattaatgaataacgAGATCATGGGTTTAGCTGCACTACTGCCACCCAACAGTCCACTAGGATGGATCGGAGTAGCCCCGACTCTCTGGCGCCTCTCGGTTTGCAACTGTCTGGCCGACCCAGCCTGACGTGGATCATAGGAGGACGGGAGGCTCTGGCACCGAGCACAGCTTCCACAGAGCCTTCACGTCAGCAGCAGACGATCTGCAGCGGCAACATGCTACAATCAAACTGCAGACATGCCAGCCTTCAGCTGCAAACACGCTGCAAACATGGTAGCCTTCAGCGGCTACTCGCTGCAACGATGCACAACAGGTGACAGACACAGCTCCTGTAATCTGTTGTTCTGTGGCACATCGagcacatagacacacacacacacacacacacagcacctcGATCCGCAGCGCAGTGCCTCAGCCCCCCCCGGTGAGCGTGCTGACCCGGGCAGCGGTGACACTGCGCAGCGGGGGGCCCCGGGGCTAGGTGGGCGGGACCGGCTGGGCCGGGGGGGACCCGGGCTCGTGATCAGAGCCGCTGGAGTTGTCCTCATCGTCCTCGTCGGTCTGCTCGGCGGCACGGTACAGCACCAGCGCCTGGGTCTTGTGCGTGATGGTGACGGTGCACGGGCCCTGCGCCCACGGCTCTCCGTCCACCTGCATGGGCATCCGGGAGCTCTTCAGCACCAGCTGGACCGAGCGGGACAGAGCCGGACACAGCACGTCAGCACAGGGACCTCACTGTCTGCACTGGAGCTACACTgtgtggactggactggactggactggagctACACTATCTGGACTTAACTGGACTgaagCTACACTGTGTGGACTGGACTGGGTTGGGTCTGACTGGTGCGACCCTGTGTGGACCGCACAGTGTCTGTACGCTACAGGTGAGCTGCTAACTTTCTGAAAtcaaaggagggagggagacggaGGGGTAGATGGACTCACCCTGACGGTGTGCGCCTGGCCGAGCCGCACCGGGTTGGCCAGCTTGACCTGGATCTGAGCGCAGTGGAAGGAGCCGAATACACCCACCACCTCCAGCAGCCCGTCATCCAGCCTgggggagacacagagacacagacacccCCGCGTCAAGAGAGTGAGGCAGACAgtcaggcagagagagagagagagagagagaacagaagaaagagcaacaaagaaagacagaaagagagtgGGGAGAAGTGAGAGAGAACAGACGAGGTGCAAGATGAGTGGAGAGCGAGGGTCCCTACCGGGTCGGGGGGCACGGCTCATCCCCCATACCCTCCCACAGCCGGCAGCCTCCGCCCCAATACCCGATGTTCAGCACGATGATGCCCTCCAGGCTGGGCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55012 lncRNA downstream 131720 30173492 ~ 30175306 (-) False AMCG00013390
TU54958 lncRNA downstream 216879 30088803 ~ 30090147 (-) True G44086
TU54905 lncRNA downstream 245392 30040205 ~ 30061634 (-) True AMCG00013384
TU54896 lncRNA downstream 278796 29926383 ~ 30028230 (-) True G44034
TU55124 lncRNA upstream 73920 30384686 ~ 30455606 (-) True G44213
TU55187 lncRNA upstream 223205 30533971 ~ 30539317 (-) True G44261
TU55177 lncRNA upstream 229547 30540313 ~ 30542858 (-) True G44256
TU55180 lncRNA upstream 229902 30540668 ~ 30562691 (-) False G44256
TU55192 lncRNA upstream 240623 30551389 ~ 30552050 (-) True G44264
AMCG00013405 mRNA downstream 16538 30286642 ~ 30290488 (-) True AMCG00013405
AMCG00013390 mRNA downstream 122602 30167981 ~ 30184424 (-) True AMCG00013390
AMCG00013392 mRNA downstream 142548 30155262 ~ 30164478 (-) True AMCG00013392
AMCG00013393 mRNA downstream 153668 30126697 ~ 30153358 (-) True AMCG00013393
AMCG00013391 mRNA downstream 180525 30117800 ~ 30126501 (-) True AMCG00013391
AMCG00013404 mRNA upstream 11499 30322265 ~ 30332700 (-) True AMCG00013404
AMCG00013403 mRNA upstream 22682 30333448 ~ 30340461 (-) True AMCG00013403
AMCG00013410 mRNA upstream 119898 30430664 ~ 30436741 (-) True AMCG00013410
AMCG00013409 mRNA upstream 146637 30457403 ~ 30464091 (-) False AMCG00013409
AMCG00013412 mRNA upstream 157864 30468630 ~ 30482326 (-) True AMCG00013412
TU55119 other downstream 16159 30288292 ~ 30290867 (-) False AMCG00013405
TU55007 other downstream 137890 30165817 ~ 30169136 (-) False AMCG00013390
TU54953 other downstream 223681 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other downstream 223681 30081036 ~ 30083345 (-) True AMCG00013386
TU54894 other downstream 296326 30006764 ~ 30010700 (-) False G44034
TU55155 other upstream 89121 30399887 ~ 30423025 (-) True G44243
TU55165 other upstream 144961 30455727 ~ 30459331 (-) True AMCG00013409
TU55166 other upstream 166372 30477138 ~ 30478194 (-) False AMCG00013412
TU55168 other upstream 172753 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other upstream 172753 30483519 ~ 30486331 (-) True AMCG00013411

Expression Profile