RNA id: TU55177


Basic Information

Item Value
RNA id TU55177
length 2327
lncRNA type inter_gene
GC content 0.55
exon number 3
gene id G44256
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30540313 ~ 30562691 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNNNAACGGTGACGAGACACACGGCTCACACGGATCCCTTGTCGCCGCGGTGATGGGaggctcacacacacacgcacacgcagcGCCGCTCCCTGGACGGCCCCATGTGCATCCGGACCCACACCTGTACAGCAGCAACCCTCCCACTCCCACTGTGACCCCCATTCAGCCCAGCGTCAGGCACGACATCATTGCCAGAGGCACTGGACACAAACATAAGGCATGGACTctgcctgcccccccacccagtcACAGAGAGGATGGATCAGGGCCATGAGGCTCTGGTGTCCCCCCCCACCGCCGGGTCTTGATGACCTCATCGACCAGAGTCCTCTGGGTCAGGAGTCACAGAGCCATTGTCACTGGAGTTCCCAGGCCTGAACCAGTTTGACAGGCAGGTATAAGCCCTGCCCCTCAAGGACCTGACTGCCCAGTCCTGCTGCAGGACCCCCCTACAGTGACAGACCAGACCTCCATTCAACTCCACTCCACGGCACCTCTCAGCCCTGGCCCAGCAGCGCCTGTGTCTGCATGCTCAAAATGGCTTAATTGGAAACTTGGTATAAATTGCTtaaattgttcttgtttttttatcacaGGCAGCACCTGAACTAATTAGTAGAGAATCTGACCATTAACGAGCTGAGTGGACCACGGCAGTGCAACGGGCTGGACTGGACGGTCTGAGACTGCCCCTCCCATCCTCACGGGCATCTGGCTGCAGTTCCCCCCACAAACGCCAGCGAATCCCAGCACCACCCCGGCTCGGCCGCACCTCTGTCACAAAGGTCTCCCTCTTCAAACCCGAACCAGGAGCCCCTGGAAGGCCTcccgtccctccctccctctctccctctccatctgtcttcaattttcctttttctttttaaggcaACATGGTAACAAAGTTctaaccatttaaaataatactcagaagaggggagagagacggggggTTAGGGGCGGGACTGCCCCAGTGAGCTCCACCACTGCCCTGCAGCGGAGACGTCCAGCATGATCAGGACAACCCACAAGGACATGACAGGATGGAGAGAGCGATGGAGAGAGCGATGGAGAGAgcgatggagggagggagagagagagagcccttCTGTCACCCTATCCCCATGCACACTTGCTGTCCTTCACCCTCCTGGGTCTTCCTCTCCCTCGTTCGTATTACTTCGAGATTATTCTAGTTCCTGCCCTTTGATTTCTACACAGGGGCAGTTATAAGGCAGATGAGGGGGTTCAAACCCCAGGAATGAtgagggtcaggggtcaggggttggGTCCTTGGCCACTCAGATCAGCTTCACTCAGATCACACTTCACAAGGCAGACTGGTCGCAATaccagcgagagagagagagggagggagggagtgaaggGGAGATGAGGAAAGGAGATGGGAAGGGAAGGGCGGAGGTGGAGAAGCACTCGACACAGATGGGATGAGAGGTGAATACCAATAACAGCCGGGCCAAAatgtggttttagttttttttttttttttttttcttcgattttatatataaacaaaccaaaaaacaaaaatttggattgtacacttttttctttcctctttccaTTTAGACTTTCACTCTATCTCTGCTCTTATATATATCTCCATTACCTCTGTAAATCTGACTGGTCAGCAGCACCGGGACCTGTCGCTGCTCCTGCTGATTTCTGGGGGTCGGGGACAGGGAGGAGGACGGGGGGCGGGACAGGAAAGgcagtctgtgctgtgtgtccacCACACTGTGCTCAGGACACAGCGGCAGCGCGGCGGACACACAGGACAGCCTGAGGACAGGGAGGTAGAGAGAGCAGGGATTGGCTGGAAGGAAAACCGCACTGGCCTTGGAGCCGTTACAGCAGAGCAGTGAGAGGAGGAGGACGGGGGGAAAGAAAGGCCGAAAGAGACTGGGTAGGGGGGTTTCAGGGGTATCAGGGGACAGGGGTGTCAATCCTTCCAGTCCTTCTTAATGTTGAGGTTCCACTCCCAGGACAGGTGGTTGTGCTTGTCGTCGTCGGTGAACTGGGACTTGATGTTGTAGGTGCCGCGCGCCAGCATGCCCTTGGGCGCCTCTTCCAGCGGCGTGAGGAACTCGTACTCGTCCGGCCGCGGCCCGTAGCTGCCCACCATGTAGTCTGACTTGTCaaTCTTCACTCCTTTCCTGTAGGTCTGCTGGACGTACTTCAGTCCCGAGACGATCTCCTTGTTCACCTTGAAGCTAATCTTGATCTTGTACTCCACTCCCTCCTTCAGAATGAACGACTGCTTCTTAAATTTCTCCAGGTCTccttaaaagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55187 lncRNA downstream 996 30533971 ~ 30539317 (-) True G44261
TU55124 lncRNA downstream 84707 30384686 ~ 30455606 (-) True G44213
TU55141 lncRNA downstream 229547 30307026 ~ 30310766 (-) True G44230
TU55012 lncRNA downstream 365007 30173492 ~ 30175306 (-) False AMCG00013390
TU54958 lncRNA downstream 450166 30088803 ~ 30090147 (-) True G44086
TU55192 lncRNA upstream 8531 30551389 ~ 30552050 (-) True G44264
TU55183 lncRNA upstream 10923 30553781 ~ 30599051 (-) True G44259
TU55184 lncRNA upstream 11896 30554754 ~ 30557248 (-) False G44259
TU55246 lncRNA upstream 187520 30730378 ~ 30731433 (-) False AMCG00013425
TU55270 lncRNA upstream 229684 30772542 ~ 30774110 (-) True G44330
AMCG00013420 mRNA downstream 6434 30523907 ~ 30533879 (-) True AMCG00013420
AMCG00013419 mRNA downstream 18642 30507951 ~ 30521671 (-) True AMCG00013419
AMCG00013411 mRNA downstream 53997 30483305 ~ 30486316 (-) False AMCG00013411
AMCG00013412 mRNA downstream 57987 30468630 ~ 30482326 (-) True AMCG00013412
AMCG00013409 mRNA downstream 76222 30457403 ~ 30464091 (-) False AMCG00013409
AMCG00013421 mRNA upstream 81118 30623976 ~ 30635826 (-) True AMCG00013421
AMCG00013430 mRNA upstream 150217 30693075 ~ 30697703 (-) True AMCG00013430
AMCG00013432 mRNA upstream 155382 30698240 ~ 30700665 (-) True AMCG00013432
AMCG00013427 mRNA upstream 159908 30702766 ~ 30705013 (-) True AMCG00013427
AMCG00013426 mRNA upstream 168651 30711509 ~ 30723530 (-) True AMCG00013426
TU55168 other downstream 53982 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other downstream 53982 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other downstream 53982 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other downstream 53982 30483716 ~ 30486331 (-) False AMCG00013411
TU55166 other downstream 62119 30477138 ~ 30478194 (-) False AMCG00013412
TU55745 other upstream 2022902 32565760 ~ 32567952 (-) True G44719
TU55769 other upstream 2079323 32622181 ~ 32623918 (-) False AMCG00013488
TU56122 other upstream 3135366 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 3149986 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 6416319 36959177 ~ 36959914 (-) True G45468

Expression Profile