RNA id: TU55192


Basic Information

Item Value
RNA id TU55192
length 580
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G44264
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30551389 ~ 30552050 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGTCATCTTACTGACCGAGTCACACTAGACCCTGATAAAAGCTGAAGAGTGCAGTGCTGATTTCAGGCCAGCGAGGGCCGACAGGACACCGATGATCCAGATCCAGTGACGGACTCCCCGACCGCCTCTTGGCAGGACAGACATCTCCCCCCACTGGAGACACTGGACCACTGAGTCACAGCTCTGTAAAGACTCCCTcacaggactttttttttCTTCTTAAACAGCACCACGGAGTCATGGGTGACCTCGTACTTGGAGAAGAGCTCGTCGGAGGAGGTGATGCCGAACGGGACATCGTCCACAGCCTCCGCAGCCTTCAGGAAGGTTTTGGCATCTTCCGACACCACAtcctgggagagggagacacaggTCACTCAATCACAACAGAACGCCTCCACCTGCCCCATCCCACGCCTCAACTAAAACCCACACCCCTCTCACCTTGAAGAAGCCGATGACGGCAACCTCATTGTCGGTGACAAGCGCCTCGGCCTGGGTGGCCTCGGTCAGGGTGGCGGCAGCAGGGCCAGTGCGCTTCTTCAACCAGGATACGATGTCATCAGCCTGACGCCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55177 lncRNA downstream 8531 30540313 ~ 30542858 (-) True G44256
TU55187 lncRNA downstream 12072 30533971 ~ 30539317 (-) True G44261
TU55124 lncRNA downstream 95783 30384686 ~ 30455606 (-) True G44213
TU55141 lncRNA downstream 240623 30307026 ~ 30310766 (-) True G44230
TU55012 lncRNA downstream 376083 30173492 ~ 30175306 (-) False AMCG00013390
TU55183 lncRNA upstream 1731 30553781 ~ 30599051 (-) True G44259
TU55184 lncRNA upstream 2704 30554754 ~ 30557248 (-) False G44259
TU55246 lncRNA upstream 178328 30730378 ~ 30731433 (-) False AMCG00013425
TU55270 lncRNA upstream 220492 30772542 ~ 30774110 (-) True G44330
TU55331 lncRNA upstream 373436 30925486 ~ 30931267 (-) True G44381
AMCG00013420 mRNA downstream 17510 30523907 ~ 30533879 (-) True AMCG00013420
AMCG00013419 mRNA downstream 29718 30507951 ~ 30521671 (-) True AMCG00013419
AMCG00013411 mRNA downstream 65073 30483305 ~ 30486316 (-) False AMCG00013411
AMCG00013412 mRNA downstream 69063 30468630 ~ 30482326 (-) True AMCG00013412
AMCG00013409 mRNA downstream 87298 30457403 ~ 30464091 (-) False AMCG00013409
AMCG00013421 mRNA upstream 71926 30623976 ~ 30635826 (-) True AMCG00013421
AMCG00013430 mRNA upstream 141025 30693075 ~ 30697703 (-) True AMCG00013430
AMCG00013432 mRNA upstream 146190 30698240 ~ 30700665 (-) True AMCG00013432
AMCG00013427 mRNA upstream 150716 30702766 ~ 30705013 (-) True AMCG00013427
AMCG00013426 mRNA upstream 159459 30711509 ~ 30723530 (-) True AMCG00013426
TU55168 other downstream 65058 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other downstream 65058 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other downstream 65058 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other downstream 65058 30483716 ~ 30486331 (-) False AMCG00013411
TU55166 other downstream 73195 30477138 ~ 30478194 (-) False AMCG00013412
TU55745 other upstream 2013710 32565760 ~ 32567952 (-) True G44719
TU55769 other upstream 2070131 32622181 ~ 32623918 (-) False AMCG00013488
TU56122 other upstream 3126174 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 3140794 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 6407127 36959177 ~ 36959914 (-) True G45468

Expression Profile