RNA id: TU55258


Basic Information

Item Value
RNA id TU55258
length 1688
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G44322
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30772381 ~ 30774068 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCTGGTGGAAGTTTGTGGGAGATGTGttggttgggggtgggggggctcagGGCTGGTCTTTCTTCCCCTCTTTTGCAAGGTCAGTCATGTGTTGGCAAAAGGACATAAATCAGTGTATGCTgactttttaaatcatttttgtaCTCCCCTAATTACATACAGCCTACATTATGACCATACATGAAAATTCACTTGAAAAGATATTCAACTCTTTATTGTACATCAATCGATTCTAAACTGCTTCTTACTCAGACAGGACTGCAGCCCTAGTCCTGTAATTTGACACtgaagcgcacacacacacgcatataaaCCATAACTCACACTCCTAGCTCAGAACAATTAGCACTGCAAACAGGAGGCACTTTCACAGCCGCATGCCGCACCGCTGTTCCTGTTTACCTGGCAGATGTAGGTCAGCAGCAGGAGAGGGGACACTGTTTATTATCCTGCACTGTAGACACTGACCCAGTTATGAGAGCGCAGATCCCTCTGGGAAGGGACAGCAAAGAGGCAAGAGTGAGAGGTAAGGTGATGGGGGTTAAACTCCCCTTCAAAGGAAGCTTAGAGGTGGCTGAGAGCTCGAGAGCAGTTCTATAACAGGCACAGGGATGTGGAAAACCTGCTCCGTTTTTTTGGCCAGGGCCCTGTGTGCATGGACAGAGGAGTCAGACGTAAAACCTTTAAATTGgtttttggttattaaaatcaattaaaaacataaaaccacaGAAACACGAGCAGCCAGCCAGCGAGAGGATCTTAAGGTAAACTGCTCTCATCCATTGGCACGGATGGGTACCTCCAAGCTGCGCTAACCGTCCCGGTCCCGGGAGAGACCACCCACCATACTCGGGCCTCACACCCTCTAAATTTAAAGTATCCAGTTAATTGATCTGCAGTGCACTGGACAGGAGGGCGAAGACACACACCAAGAGGTGCAACAGGGAACAAAGTAAATAGGATTCAATTAATGAAGGTGAAAACGAGCAGTGGGCTGAGAGCACTACTCACACACACGGACCGGTCCCCGGGTCAATGGAGCCGCACGTACGAGTCACACCTATAAAGATGTTCAGGTCGAGCTGCACTGGAGATTTGCAGTGTTTCCTCAGAGATGTGAGTGAACATCACGTgaagcccagagagagagagggagagggcgagTAATGCAGTAATTCTGCCCATTAGCTGTAAACTCAAAGGCCGGCACATTGCAGAGCGAGGAAGAGACATGTGACAACTGCAGGAGGGCACTCAACACACCTACACCATCCTCTCTCCattatccacacacacacacacacacacacacacaaacatgcatataCTTAGCccacacaaacagacaactgGACAGTCGATCGTGATGGGCTGCAGGTCCGAGCTCTCGCCCCGCTGCTTTACACACAGAGCTCAGCAGAGTGAcgtgaaaaactaaaatagaacAGAAAAGATAAGACGACCGCGGCTCCCATGTCACGCAGGGCATCGGCTGCAGGTGTGAGCGAGCGAGGGGCATCGCGTGACGGCGGGAGCGTGGTGAAGGGgttgagggagggagagagaggagaggagatcGTGACTTTGGTTCAGTTCAATGTCTGAAAGAGTCTCTATcatcaaaaaggaaaaacaaacaaacagaggcTCCTCTACTACACGCGATGCCGTGTGCCAGGAGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55242 lncRNA upstream 34894 30736809 ~ 30737487 (+) True G44307
TU55241 lncRNA upstream 37586 30734536 ~ 30734795 (+) True G44306
TU55089 lncRNA upstream 314710 30455672 ~ 30457671 (+) True G44182
TU55072 lncRNA upstream 341732 30426624 ~ 30430649 (+) True AMCG00013408
TU55048 lncRNA upstream 428458 30342469 ~ 30343923 (+) False AMCG00013399
TU55259 lncRNA downstream 114 30774182 ~ 30774548 (+) True G44323
TU55328 lncRNA downstream 148678 30922746 ~ 30934437 (+) True G44379
TU55329 lncRNA downstream 150668 30924736 ~ 30926480 (+) True G44380
TU55333 lncRNA downstream 161772 30935840 ~ 30936171 (+) True G44383
TU55343 lncRNA downstream 192841 30966909 ~ 30970500 (+) True G44388
AMCG00013422 mRNA upstream 8 30770263 ~ 30772373 (+) True AMCG00013422
AMCG00013423 mRNA upstream 43146 30727085 ~ 30729235 (+) True AMCG00013423
AMCG00013424 mRNA upstream 61302 30707785 ~ 30711079 (+) True AMCG00013424
AMCG00013417 mRNA upstream 205831 30563240 ~ 30566550 (+) False AMCG00013417
AMCG00013413 mRNA upstream 209819 30560481 ~ 30562562 (+) True AMCG00013413
AMCG00013437 mRNA downstream 85656 30859724 ~ 30871739 (+) True AMCG00013437
AMCG00013438 mRNA downstream 119364 30893432 ~ 30895656 (+) True AMCG00013438
AMCG00013439 mRNA downstream 132778 30906846 ~ 30907997 (+) True AMCG00013439
AMCG00013440 mRNA downstream 166012 30940080 ~ 30949350 (+) True AMCG00013440
AMCG00013446 mRNA downstream 211404 30985472 ~ 31044736 (+) True AMCG00013446
TU55111 other upstream 204162 30563368 ~ 30568219 (+) True AMCG00013417
TU55098 other upstream 276725 30490827 ~ 30495656 (+) True AMCG00013416
TU55045 other upstream 550172 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 843684 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 1113433 29640623 ~ 29658948 (+) False AMCG00013364
TU55261 other downstream 2783 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1130900 31904968 ~ 31911801 (+) True AMCG00013468
TU55622 other downstream 1499200 32273268 ~ 32283499 (+) False AMCG00013473
TU55641 other downstream 1649208 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other downstream 1649208 32423276 ~ 32429887 (+) True AMCG00013478

Expression Profile