RNA id: TU55331


Basic Information

Item Value
RNA id TU55331
length 753
lncRNA type intronic
GC content 0.37
exon number 2
gene id G44381
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30925486 ~ 30931267 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCATCTCAAGAAGacattatataataaatgagAACATTATAAGGAAAGTAGGAAATTTAATTTACAGGATTTCATTATCAATATAGTTTCCAATAGAGatggcttttctttttattttacaaaatgtctgTGGAATGAATTAATTGTGATGTCACTTGATTTATGTTATAGATTTtgctataatatataatatatatatagcaggaTCTGTGGTTAAAAATCAGTTTTTAGAGGCCACTGTACCTTGAGtttgttaaatatgtatagatGACGCTGAATGGCACAACTTTGCAAAAGTGGCAACCTACATCAAAAGATCCGAGTGAGTGCAATGTTTAATGGCTCACATCATAATTGAACCCATACTGAAACattggaatttgttttaaattaattatttatactaatttatagtaatatttatatatcaatagTTTTCACAACTGGAACGCCTGAGCTGGCAACAGATGTTTCCAAGGCATGGAATGTGAAAGACATCACCTCACCTTCCCAGCATGTACAGCATGTGTCCGGGGTCATCAGAAAAAACCCCCATCACCCCAATGGTAAAAAGCCCTATCCTGGTAGAAGTTGCAGAGGAATAGCCAGACACTGATGGTCTCCATCCAAAAGATTACAAAGAGGAACCAGACGGAGGACAGCAGGAACAGTTCACACACCATTCTGGAGGGAAGGCAGCTGTCTGCAATTCAGGAAGTTGGGAGAGAAAGGGTGCTCTGAAATGCAGAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55270 lncRNA downstream 151376 30772542 ~ 30774110 (-) True G44330
TU55246 lncRNA downstream 194053 30730378 ~ 30731433 (-) False AMCG00013425
TU55183 lncRNA downstream 326435 30553781 ~ 30599051 (-) True G44259
TU55180 lncRNA downstream 362795 30540668 ~ 30562691 (-) False G44256
TU55332 lncRNA upstream 493 30931760 ~ 30935200 (-) True G44382
TU55334 lncRNA upstream 6358 30937625 ~ 30937857 (-) True G44384
TU55378 lncRNA upstream 115458 31046725 ~ 31047119 (-) True G44420
TU55438 lncRNA upstream 372262 31303529 ~ 31310495 (-) True G44469
TU55457 lncRNA upstream 437914 31369181 ~ 31371002 (-) True G44487
AMCG00013443 mRNA downstream 12674 30910944 ~ 30912812 (-) True AMCG00013443
AMCG00013441 mRNA downstream 20223 30896736 ~ 30905263 (-) True AMCG00013441
AMCG00013444 mRNA downstream 37296 30871902 ~ 30888190 (-) True AMCG00013444
AMCG00013435 mRNA downstream 69371 30850121 ~ 30856115 (-) True AMCG00013435
AMCG00013433 mRNA downstream 105296 30816609 ~ 30820190 (-) True AMCG00013433
AMCG00013445 mRNA upstream 26922 30958189 ~ 30976781 (-) True AMCG00013445
AMCG00013449 mRNA upstream 122546 31053813 ~ 31068895 (-) True AMCG00013449
AMCG00013448 mRNA upstream 150385 31081652 ~ 31082490 (-) True AMCG00013448
AMCG00013450 mRNA upstream 164730 31095997 ~ 31096392 (-) True AMCG00013450
AMCG00013456 mRNA upstream 271046 31202313 ~ 31203338 (-) True AMCG00013456
TU55168 other downstream 439155 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other downstream 439155 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other downstream 439155 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other downstream 439155 30483716 ~ 30486331 (-) False AMCG00013411
TU55166 other downstream 447292 30477138 ~ 30478194 (-) False AMCG00013412
TU55745 other upstream 1634493 32565760 ~ 32567952 (-) True G44719
TU55769 other upstream 1690914 32622181 ~ 32623918 (-) False AMCG00013488
TU56122 other upstream 2746957 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 2761577 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 6027910 36959177 ~ 36959914 (-) True G45468

Expression Profile