RNA id: TU55343


Basic Information

Item Value
RNA id TU55343
length 3301
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G44388
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30966909 ~ 30970500 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacagtgaatcaaaaaaaaaaacaatagcttAACTATTTTTTGAGCCtaactaaacatttaaacaggtCCCTCCCTACACGGATAGCTAATAAATGACACATTAGACAAAAcgcaaataatttaaatctgaGCCTGAAATCAAAGTCCATAAATCCAAAATCAAACTTCTCTACCATTATCAATGTTCCTTTTCTTCTCTCACTCACAATCACTCTCCACACTGCATGtgctcctcctgcctctccccACCAGGGAGCCACCTGCTGTGAGGCTGGGATCCACTCGCATGGGGGACAGCCCATCAGCTGCTCCTCCTGTTCATTTGCCTCCTGAAACTGGAACCCCCCAGGAGGCACTGTCCCTCGCTGGATCCTGGGGGGGTTCACTTTCGGTGCTGCCTGGAATGGCAAGGTACTACTGCAAAGTACTCTACTAAGATTGCTCCTGTAAAAAGCCAAATCTATCACTCACTTATAACTTATCAgccatatacattaataatagtTACAGTAATATTTTGACTAATACTTATCTGTGCTGTAATTATTCAAAGTGTTGATAGAATagaaaatatttagattttttttatttaaatagtagAGTATTAATCGTGTTGCATAGATGGAAAGTTAACAAGTAAATTATtctacagcaaaaaaaaaaaagttatgtttgaaattattttgaagaaataaattgCACTGGTTCTTGTTCACTTATTAGATTAGAGCTGTCTTTTAACATCCattcaatgttaatttaaatgttaaatttaagtTCAAATGAAGGCCTAAGCACCCACATATATTCAGCAGCAGAGATGTATGAGGAAGGTCCTACTGGTaagatttatgattatttttaaaacttaaattacttttgcatcaattacaaataaatatattttactccTGTATGCAACATCATGCTGTTATTACATTCATTATACAATGCATGCACATAAACtgaatggaaaaaacacaaaattgtttCCATATATCAGATCTATATAATTAGGAAACATTCCTGCATGGTATACTCTGCAAAGtttcatattcatttaattaagagGTTTCAATCAATGATGGAAACTTTATTCCttcacatttaaatcaaatgcaaaatagtTTGGTTTGCAAGTGGGGACAGTTTCGCTTTTTATACTGACAGTCAAAAATTAATACTGGTGTGAGACAGTTTCTTACCGATGAGACTTGGTAAGACAGACTGCAGATGcataccatttatttttgtcataatTGTATATATGCATGGAAACCCATTATACATGTGGCCTGTTCAGAAAGCTTGAATTGAGTATGGAAAATCAAATGTATCcaaatgattttttatttttccatgtagCTTCCTAGAACTGAAATACACTTGGTCCAGCAACACACAGTCCTAATATCTATATTATACgcacATTGCTGATGTACATACACATTGCTTCTATGCTGTGTAATTGTTTCAGCAGCCTATGATGCACGGTATAACCTGAAATATGTGGGAAACCTCTTaaattttttttagaaattacaaaacatatgaCAATGATGGTACACAGGAACTTTGCTTTTAAACAAActactttaaattgaaaatgaatttatatTGGGTAGTTCACAACTTTCATGTTGTAGACAAAAAAGCAACCTGTTCTTCTGGCTTAATACATCAGAGACAATTGGTATTTTTGAAACGGCATCAACAAACTGCGTGTTTcaataaattgttaaaaataaaatgtaccttttaCAGTTACCcatgttaatgttttaattattaaatagcatttttaaataaggtGCAAGTATGGCGagtataaaatgtttcaaatattaagtacagaaatgttttgaataattaaaaatataattaatattcaaaAGTTGCAGCCCTACTTATCATATAAAACTAATAAGTGTCTCTGGAGAGGATACATTGTCCAAATATTATACTTACAGCAACTTCAACAATACTCTGAATATCATGCGCATTAGATTCCATCAAATCCTACGTTCTATTAGGTTTCATTCCCCGCCCCCTCCTTCCCCCAGTTTGCTCAAGGTCCACTTTCTGTTTGTCATGGATAGCCGAGTGCTTTTTCAGGCTGCCTGACTCAATGAAAGTCTTCCCGCACTCTCTGCAGCAGTATGGCCGCTCACCTGTGTGAACACGGGAATGCTTCCTCAGGACACACTTGTGCCGGAACATTTTCCCACACTCGCCACATTTGAAGGGCTTCTCCCCCGTGTGGATCTTGCAGTGCTCCTTAAGGCATGAGCGTTGGCTGAATCTTTTGCTGCAGTCAGGGCAGGGATAGAGTCTGAGGCCCGTGTGAACCAGCTGGTGTCTTTTGAGTGTGTGGGACTCCCCAAAGCTCTTCCCGCATTCTGAACAGCGGTGAGGCTTCTCTCCGCTGTGGATGCGTGCATGCCGTTTAAGGTGATGGCCCTTGCTGAAGCTGCTACCACAGATGCCGCAGCAGTATGGCCTATCCCGGTTGCGCTGCTGCTGTTGCCTTTTGTTGAGCTTCCTACTACCATCTGAAGGCTGGTTGGGTGAATCAGCCATATGCATCATCTTATGCTTCTGGAGTTGGAGGCTACTGAAGAAGCAGCCTCCACACTCCACGCACTTGTGGTCAGCCTTCTTTCTGCGTCTGAAACAAGGCTGGGCCATTTCAGGTGTACTAGATTTGGTTAGTGAGACAGGCTGAGAAGGGGATTTTCGCCTTTTCCCTATCCTGAGTGAGCCAGTCTCTTCGCCTTTCCTCTCAGTAGGCATCCCTCCCTTACCTTCCCGGGATTTCTCAATCTGTTTGTTGTGTGGCTTCCTCTCTAGCGATTCAGATTGTGGTGGCTCCAGTTTGTCATGAGTGGTGCTTGCTATATCTCTGCTGTGGACAGATTCCAGTGCAGACTCCCGTTTAATGGAATCCAGCAGTGATGACTCCAGCTTCTCGGCACTAGAAACCGGTTCAGATGCTGCCTTGTGAGAACCAGCGGAGTCAGAATCACTTAACCCCTGTTTGTCTTGAGAAGGACTCACCCAGGAACTCTCCTCTTCAAGGCAGATGTACTCCAAATCTGGGATCTCCAGTTTAATGCAGGCAGATCCCAGAGCAACTGCTTCTTGCTTGGTGAGGAAAGACTCTGTCCTTGTTTCTTGGCCTTCACTCTGCTCACTAATGTTCGGCATATCCTCTGtccttaaaaacaagaatactATCTCTTAGTTCTCTTGCTTTGAAGCTTTCAGATTTTACCATAATATGCTATAACAAGATCAgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55333 lncRNA upstream 30738 30935840 ~ 30936171 (+) True G44383
TU55328 lncRNA upstream 32472 30922746 ~ 30934437 (+) True G44379
TU55329 lncRNA upstream 40429 30924736 ~ 30926480 (+) True G44380
TU55259 lncRNA upstream 192361 30774182 ~ 30774548 (+) True G44323
TU55258 lncRNA upstream 192841 30772381 ~ 30774068 (+) True G44322
TU55394 lncRNA downstream 128850 31099350 ~ 31106308 (+) True G44433
TU55435 lncRNA downstream 333037 31303537 ~ 31310491 (+) True G44468
TU55436 lncRNA downstream 333037 31303537 ~ 31308223 (+) False G44468
TU55456 lncRNA downstream 398707 31369207 ~ 31371002 (+) True G44486
TU55503 lncRNA downstream 676863 31647363 ~ 31665161 (+) False G44529
AMCG00013440 mRNA upstream 17559 30940080 ~ 30949350 (+) True AMCG00013440
AMCG00013439 mRNA upstream 58912 30906846 ~ 30907997 (+) True AMCG00013439
AMCG00013438 mRNA upstream 71253 30893432 ~ 30895656 (+) True AMCG00013438
AMCG00013437 mRNA upstream 95170 30859724 ~ 30871739 (+) True AMCG00013437
AMCG00013422 mRNA upstream 194536 30770263 ~ 30772373 (+) True AMCG00013422
AMCG00013446 mRNA downstream 14972 30985472 ~ 31044736 (+) True AMCG00013446
AMCG00013447 mRNA downstream 137142 31107642 ~ 31131214 (+) True AMCG00013447
AMCG00013451 mRNA downstream 178673 31149173 ~ 31150309 (+) True AMCG00013451
AMCG00013455 mRNA downstream 386305 31356805 ~ 31358367 (+) True AMCG00013455
AMCG00013460 mRNA downstream 494194 31464694 ~ 31465848 (+) True AMCG00013460
TU55261 other upstream 189740 30776851 ~ 30777169 (+) True G44325
TU55111 other upstream 398690 30563368 ~ 30568219 (+) True AMCG00013417
TU55098 other upstream 471253 30490827 ~ 30495656 (+) True AMCG00013416
TU55045 other upstream 744700 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 1038212 29921067 ~ 29928697 (+) False AMCG00013375
TU55551 other downstream 934468 31904968 ~ 31911801 (+) True AMCG00013468
TU55622 other downstream 1302768 32273268 ~ 32283499 (+) False AMCG00013473
TU55641 other downstream 1452776 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other downstream 1452776 32423276 ~ 32429887 (+) True AMCG00013478
TU55933 other downstream 2135792 33106292 ~ 33106595 (+) True G44870

Expression Profile