RNA id: TU55456


Basic Information

Item Value
RNA id TU55456
length 1796
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G44486
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31369207 ~ 31371002 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAAAATTGGTGTAGAGGTCAGAAGACTCTACAAGAGTGTTGTCCATTTGTGTTCTTTGGCCCCATAGTTTGCACAGCACTTTTACAGCTATGACACAaactctcccacacacacaggaaagCAATACAGGATTTTACAAATAATGCGATGCACAAGACTTAAATCAGACATCACAATACAatagaaacacaacacaggcatCATTTTAAACCTTCCCACCACCGCTTCTCCCAGACTATATGTTACCTTAAATGCAACCAgtgaattatattatattgatctatatctaaaaaaaacaactaaaataaaacataaatacacataacacatttacactgtttaaaaaatatttggacatgAGAGTACCATATATTAATCCTTGTTGGTTTGAATATAACAATCTGGATGGTCGATGGTGGAGGGAATGGGAGGGAAGGTGAGGGGGCTAGGAAAGAACTTACAACAGATAGAAACTTATTTGTTCCGTCTGTCCTCTCTAATATAAAAATCACCCCATTTAATTGTTAAGCTAAACACTTAGTACTGTTTCCAGAGAGGATAGGGGCAGATTTTTAAAGGAGACCCACCAACCCTGTAGGAATGTGACCCTACGTACCAGAGTCTGGCCATCAACAAAACTACACTTCCATCTAGATAAACATTTTTAAGCAGTCTCACTGACAAGTTCATAATCATTATATAACATATACTATATATGATTTTCTCTTTAAACACTTAGTCATACCAATATATTTTTGGCTTTTCCCGCCAAAGCCAACTCCTATTACACTGCAGTTTGGTCCTTTTTTCATTTGACATGGTATACAATTTCTACAAAACAATACAGGGCCAGccattgtgttttaatacaatCTCAGCTTTGAATTAACAAGCTTGCATTAACCAGTTCCCAGTTATGGGCTTGGTTTGGGTCCTACCGTTTTTCATTACCATCTGTTCCTACATTGCTCAAAAATCCTGATGAATGACATTGTGTAGCTTATGCAGAATAAATATTACACAGCTTCAGAGATCAGACAATattacagctttcaaaaatatgtacTTGAATCTCCTAAAATTATGTAATgttgaatgttattttattatagaaaTTATGCCATCTCTCTCATCCTTTAATCTCGCCAATTTCACACTAGGATTTTATAGATGGAAACATTGGAGCACATTTTGGGTTGGAAAGCTTTGGAATTTGATGGAGGTCAATATTGAATTCCCAGCTTTTACCCCAGTGTCACTACACAATAAACTACAATACATATACTATATTGCAAATAGATTTTGCAGGGTAAGTATTGCACAGACACTGAAATAAAGGGATTGATTTCAAAGCTTTCCCACAAACCTCATTGGGGTCACGCTTGGGCGGTGTCATAAAACAACAGAGACCAGAAATAtattatagcctatatatacacacacacacacacacacacaaaataacaatgtaaagatttttaaacaagcagtttaaataaatacaaataagcagAAACAAGAGGGTGCAACTTAAGGGGAGAAATCTAAAACTAGagtacatttaattacagttttcaaCCTAAGTCTCTACTGGCTTCTGCTCTTCTAGGCAAAAGCCCAAAAGTTTTGGCACCAGCCCCAATAGACTTTTCCTCAGTAATTATGTAGGGTTGGTGGTGGGCTTCTGCAACATTCCAATCGCTCCACTTTTAGCCAATGTTATAGACAACTGAATGGTCtacttacactcacctaaaggattattaggaacaccatactaatactgtgtttNNN

Function

GO:

id name namespace
GO:0052547 regulation of peptidase activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55435 lncRNA upstream 58716 31303537 ~ 31310491 (+) True G44468
TU55436 lncRNA upstream 60984 31303537 ~ 31308223 (+) False G44468
TU55394 lncRNA upstream 262899 31099350 ~ 31106308 (+) True G44433
TU55343 lncRNA upstream 398707 30966909 ~ 30970500 (+) True G44388
TU55333 lncRNA upstream 433036 30935840 ~ 30936171 (+) True G44383
TU55503 lncRNA downstream 276361 31647363 ~ 31665161 (+) False G44529
TU55502 lncRNA downstream 287324 31658326 ~ 31665161 (+) True G44529
TU55535 lncRNA downstream 413591 31784593 ~ 31871473 (+) True G44549
TU55549 lncRNA downstream 527619 31898621 ~ 31899202 (+) True G44561
TU55573 lncRNA downstream 659254 32030256 ~ 32030922 (+) True G44581
AMCG00013455 mRNA upstream 10840 31356805 ~ 31358367 (+) True AMCG00013455
AMCG00013451 mRNA upstream 218898 31149173 ~ 31150309 (+) True AMCG00013451
AMCG00013447 mRNA upstream 237993 31107642 ~ 31131214 (+) True AMCG00013447
AMCG00013446 mRNA upstream 324471 30985472 ~ 31044736 (+) True AMCG00013446
AMCG00013440 mRNA upstream 419857 30940080 ~ 30949350 (+) True AMCG00013440
AMCG00013460 mRNA downstream 93692 31464694 ~ 31465848 (+) True AMCG00013460
AMCG00013459 mRNA downstream 113540 31484542 ~ 31491406 (+) True AMCG00013459
AMCG00013458 mRNA downstream 125117 31496119 ~ 31502050 (+) True AMCG00013458
AMCG00013461 mRNA downstream 245922 31616924 ~ 31641312 (+) True AMCG00013461
AMCG00013462 mRNA downstream 371805 31742807 ~ 31753408 (+) True AMCG00013462
TU55261 other upstream 592038 30776851 ~ 30777169 (+) True G44325
TU55111 other upstream 800988 30563368 ~ 30568219 (+) True AMCG00013417
TU55098 other upstream 873551 30490827 ~ 30495656 (+) True AMCG00013416
TU55045 other upstream 1146998 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 1440510 29921067 ~ 29928697 (+) False AMCG00013375
TU55551 other downstream 533966 31904968 ~ 31911801 (+) True AMCG00013468
TU55622 other downstream 902266 32273268 ~ 32283499 (+) False AMCG00013473
TU55641 other downstream 1052274 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other downstream 1052274 32423276 ~ 32429887 (+) True AMCG00013478
TU55933 other downstream 1735290 33106292 ~ 33106595 (+) True G44870

Expression Profile