RNA id: TU55575


Basic Information

Item Value
RNA id TU55575
length 506
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G44583
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31987899 ~ 31988404 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tattgatttattatcattatatattatattatatatattatagatattTTCCGACGAATGAATATACAATAGCTGGTTTCTCTCTTACcttactgtgtactgtgtatttctccaaaatgtgttcatttatatGAAATCACGCACAGCAGTTGCAGGATCGTCGGTGTCCAGTCCCATGAATTTAAAAACGAgcacactgtcactgtctgGAATGATCACATTTCCATCAGTTGAAGGACTTCACTGTATCCGGCGCTGCTTAGTTGAAAAAGTCCTGCCTTTCAATTTCGCCGGTAGATTTTGGATAGACTTTCTCGTGTCTTTTCCTATCAAGCTGTCTCAAGCTTAAGTTTGTCTCAACttaaacttctctctctctctctcgccctctccctctctctccctctctctctctctcgccctctccctcgccctctctctctctctctctctcgccctctctccctctctctctctctctctctccctctctctctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55514 lncRNA downstream 247973 31739676 ~ 31739926 (-) True G44538
TU55501 lncRNA downstream 341875 31645591 ~ 31646024 (-) True G44528
TU55492 lncRNA downstream 481181 31506168 ~ 31506718 (-) True G44519
TU55479 lncRNA downstream 495391 31454051 ~ 31492508 (-) False G44507
TU55480 lncRNA downstream 495391 31461826 ~ 31492508 (-) True G44507
TU55576 lncRNA upstream 99 31988503 ~ 31989566 (-) True G44584
TU55579 lncRNA upstream 39531 32027935 ~ 32030938 (-) True G44587
TU55589 lncRNA upstream 86816 32075220 ~ 32076503 (-) True G44597
TU55608 lncRNA upstream 197134 32185538 ~ 32185802 (-) True G44612
TU55611 lncRNA upstream 204823 32193227 ~ 32193465 (-) True G44615
AMCG00013470 mRNA downstream 96405 31870261 ~ 31891494 (-) True AMCG00013470
AMCG00013466 mRNA downstream 124565 31859120 ~ 31863334 (-) True AMCG00013466
AMCG00013467 mRNA downstream 206292 31760256 ~ 31781607 (-) True AMCG00013467
AMCG00013463 mRNA downstream 292186 31688510 ~ 31695713 (-) True AMCG00013463
AMCG00013464 mRNA downstream 315528 31666716 ~ 31672371 (-) True AMCG00013464
AMCG00013471 mRNA upstream 66232 32054636 ~ 32065898 (-) True AMCG00013471
AMCG00013475 mRNA upstream 113164 32101568 ~ 32116327 (-) True AMCG00013475
AMCG00013480 mRNA upstream 419969 32408373 ~ 32411868 (-) True AMCG00013480
AMCG00013482 mRNA upstream 533246 32521650 ~ 32539826 (-) True AMCG00013482
AMCG00013484 mRNA upstream 556773 32545177 ~ 32565354 (-) True AMCG00013484
TU55168 other downstream 1501568 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other downstream 1501568 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other downstream 1501568 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other downstream 1501568 30483716 ~ 30486331 (-) False AMCG00013411
TU55166 other downstream 1509705 30477138 ~ 30478194 (-) False AMCG00013412
TU55745 other upstream 577356 32565760 ~ 32567952 (-) True G44719
TU55769 other upstream 633777 32622181 ~ 32623918 (-) False AMCG00013488
TU56122 other upstream 1689820 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 1704440 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 4970773 36959177 ~ 36959914 (-) True G45468

Expression Profile