RNA id: TU55582


Basic Information

Item Value
RNA id TU55582
length 2508
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G44590
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32053733 ~ 32057626 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccatgcCCTGCCAAGCAAGACAAGCTCCTTACCCTTTCATTACCTCAAACACAGGAGCCCCTTTAGACTCCCTTAAGAACATTGAGATAGGAGTAAGAAAGACATTTCAAGagctttaattattgttattgttatttttgcagCAAATAAAAGATGAAAGCTGTTCAAAACCTCATTCTTAACACGCGTCATTCACCAAAAGATCGTTTGCTTATCAAACCCCAATTCCCCAGCAGTTCAGTCATACAACAAGCAGAGCATGGAATAAGTTATGTAGCACTTCTAATACAACATGTGGATCTAACAGCTCAAGACCAGAGCAGAGCCAAAGGAGTAGcagcggcggcagcagcagcaaaatttggtttttctattacattttaagatttcatttttgtacACAAATATTAAGTGCAATtcaaatatctatatatctatagatatcCATCTAGATCTATATAGATATCTATACAGATCTATAAATATCTATACCTTTATATCTATAGATAGAtaactaaatataaatgcacacatacacaatttaCTAAAAGTTGTCTTGCAAAAAACTTGAGGCTCaagatttgatttattatggcacgtttatttcaaaaacaaaagggaaaaagtaAGTCACAGGCCATaccattatattaatattagacAATGCACAAAGTTACAACACTATATTTAATTGcgcacatttaaaaagcattacatttaatttatttttattttgcaaattaagtATTTACAGCAATGCTCTCAGGCTGCCTAATGCCACTACTTTATGTTCTTGAAATGTACCTCTAAAATAACATCAACGCATTGCCTTATACTAGCTTGATGCTGCAATAAGTTCTAAAAGTTACAAAAATcgggaaaagaaaacaaaaacaaaaaaactcagtGCTTTACATTCATTCCATAccctgcttaaaaaaaaaatgaaaataaaaacttttcatCCCACCCCAACCACAATTTGATCTCACTAGCTTGTACCAACTacctgtaatatatattttacaaatatatatatataaacctccTTCTGTACACAAACCGGGATCTCCTTAAACTGTAGGATTAGGCCCCCTACTGTAACAATATCAAACCGCCAGAACAAGTGCATGCAAGGTTTTGTAGTTACTTTCTTTAAAACGGTTCTGGTTTTCTTGCTAGCTGCACGGTTAAATtgttacaaacagaaaatgcttCAATGGTAAGCTGCTCTTGTTCGATGAACAAAAAACTGCCTCTGTCGCTGGATCTGTCTTTTctcaaatcaaatatttgggAATTGGGTTATTTAGAAGAGAGATCTCATGCAGTTAAGATTTCATTTCACACtcctgatttttctttttttctgctgtaattTTGTTGACAGATAGATGTCTTGTTGAATTAGAACcagattacagaatttaaaCAGTAAAGTTTTGTAGCTTTTTTATAGACAGAGTGATCAAAGGAGAACAAGCAATACAAGAAAAAAGCACTTCACTTTGCAGTCATCATTTGCACAaactCTTCATAGTTGACTTGGCCGTCTCCATCGATATCGGCCTCCCGGATCATCTCGTCCACCTCTTCGTCCGTCAGCTTCTCACCCAGGTTGGTCATCACGTGACGCAGTTCAGCTGCGCTGATGTAGCCATTTCCATCCTTATCAAACACTCTGAATGCTTCTCGAATCTCCTCTTCACTGTCCGTGTCTTTCATCTTTCGTGCCATCATGGTTAGGAATTCTGGGAAGTCAATTGTTCCATTGCCTGAAGAATGACAAGAACAGAAAGAAATTCAAGAAAGGTAACTACAACAAAATACACTTCCCGCAAAACTAATTGCAGGTAGAAATACATGCccaaaattaatgaattgattgaaaacaaatttgatCACAAATAGATTACAAGAATGACACTGTTGCCTCCGTGCAGCACAGGAGTCCActtatgccctgtttccactggtaGACACGTCAAGGTTTTCTGGACGCTTTACCATCTTCTGCCAGATGTGGCTTTatcacgcccactaaggaaatactttgttttcagaagTGGAGGCGTGtacttgacttgtagacagacacgGAAGAGAGACATCAGATTAGAGCTCAACCGATAAAGGTTCTTGAGTCTGATACGGATACTGATAATTGGGGAGCAAAATTTCCTGATTACAGATATATCTGCTGATATTGACCGGTTTTATGttaacatgcaaaacagacactttgtagcatggatccctcaaatttTGATCTCAGAGAAAAATGGTGACAAATATGCATtaaaggcaggatttttacatttgaacaaaaaactaaaagttaaCACCAAttatcatcataaataacaaccacaaatcaaactaGTGTTGCATGGTATACCGGTAAAAAGTACCATGGTACTAGAGTTTTGAAAACTGTACCATACaagcatttaaaagaaataaaaagttatatacatacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55573 lncRNA upstream 22811 32030256 ~ 32030922 (+) True G44581
TU55549 lncRNA upstream 154531 31898621 ~ 31899202 (+) True G44561
TU55535 lncRNA upstream 182260 31784593 ~ 31871473 (+) True G44549
TU55503 lncRNA upstream 388572 31647363 ~ 31665161 (+) False G44529
TU55502 lncRNA upstream 388572 31658326 ~ 31665161 (+) True G44529
TU55590 lncRNA downstream 78604 32136230 ~ 32138577 (+) True G44598
TU55609 lncRNA downstream 133553 32191179 ~ 32191395 (+) True G44613
TU55621 lncRNA downstream 225988 32283614 ~ 32284951 (+) False AMCG00013473
TU55623 lncRNA downstream 228388 32286014 ~ 32286159 (+) True G44620
TU55639 lncRNA downstream 339228 32396854 ~ 32398159 (+) False AMCG00013477
AMCG00013472 mRNA upstream 63557 31988690 ~ 31990176 (+) True AMCG00013472
AMCG00013469 mRNA upstream 132358 31915101 ~ 31921375 (+) True AMCG00013469
AMCG00013468 mRNA upstream 142562 31901530 ~ 31911171 (+) False AMCG00013468
AMCG00013465 mRNA upstream 280540 31772421 ~ 31773193 (+) True AMCG00013465
AMCG00013462 mRNA upstream 300325 31742807 ~ 31753408 (+) True AMCG00013462
AMCG00013474 mRNA downstream 168545 32226171 ~ 32226557 (+) True AMCG00013474
AMCG00013473 mRNA downstream 215803 32273429 ~ 32283927 (+) True AMCG00013473
AMCG00013479 mRNA downstream 288512 32346138 ~ 32389962 (+) True AMCG00013479
AMCG00013477 mRNA downstream 336192 32393818 ~ 32400452 (+) True AMCG00013477
AMCG00013478 mRNA downstream 366136 32423762 ~ 32455686 (+) False AMCG00013478
TU55551 other upstream 141932 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 1276564 30776851 ~ 30777169 (+) True G44325
TU55111 other upstream 1485514 30563368 ~ 30568219 (+) True AMCG00013417
TU55098 other upstream 1558077 30490827 ~ 30495656 (+) True AMCG00013416
TU55045 other upstream 1831524 30218910 ~ 30222209 (+) False AMCG00013396
TU55622 other downstream 215642 32273268 ~ 32283499 (+) False AMCG00013473
TU55641 other downstream 365650 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other downstream 365650 32423276 ~ 32429887 (+) True AMCG00013478
TU55933 other downstream 1048666 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 1318894 33376520 ~ 33394148 (+) False AMCG00013515

Expression Profile