RNA id: TU55589


Basic Information

Item Value
RNA id TU55589
length 1284
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G44597
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32075220 ~ 32076503 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctgaaccagtaactcgctgccacaactgaacttgtagctctgttgccagaaccagaaccggaaaccaactaagtctttgccggcaacagaaaagttaactgggagaaggagattgagattctttaaagaactttattaagtaaagaactttagaacctgcgctgcccgcctgtgcccatctgatcagtggagtgaatacagctggacaattgactaagtctactgtaatacagaagtgttcagtcatttaaatagctattgagtctttagaaacttgacccttggaaacgaacagggccctgctttcctcaaagactttgttttcaagtaactatggtggaaaaccctgcttacaaagaaagggtgcacaaccttggagccgtcaaaccagtggaaaacctgtttggaaaagactctactttcgcgaaaccccaacttccaggtgcatcgactgaagtggaagttattgcACAAAGCCGAAccagactgcctttgttccaaaccacacagacctcgtgccatgtgtttttatttgagcccgaagacagagaggcctctctgtgacaaagttcagataagtttaacagtttggagtttattattcatgacatttgagaaatcaattagaaatgttattctgtgagtcataaactttagaatgtgtaatatcatttagttttgcttaaatataaatgagtgttgcattacactgttttgtttgacaattttagaaataaaatctgtcaacgccgagaaatatcttctcattcctgtttaactgtttagtctgaaattgacacacgttaatagacaatagattataggtggccctgcctatccttgatcagtgaacagtaatcaattagggagaattgttgTAACAAGAACtgatagaatctttctcggcacccaaacgtaaatgagactgatatatatatatatatatatatatatatatatagagagagagagagagagagagaagttatttgacataaataataacctgcattagttatttaatgtccgactaacaataccaatgagagactcaccttcgtcttactaatcggtattgtagtcaatgtgtttgtaattttatgtaacgttttgtgtgttatcatatgcgattccattgttctttgatttggtcacggaagtgatttgtctttgatttgttgatcttgagtgaattttaattagttttcccctttttgtataactagtgtagtgctacatttcatctttgtttgtaataaatttgagaatttatatctttggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55579 lncRNA downstream 44282 32027935 ~ 32030938 (-) True G44587
TU55576 lncRNA downstream 85654 31988503 ~ 31989566 (-) True G44584
TU55575 lncRNA downstream 86816 31987899 ~ 31988404 (-) True G44583
TU55514 lncRNA downstream 335294 31739676 ~ 31739926 (-) True G44538
TU55501 lncRNA downstream 429196 31645591 ~ 31646024 (-) True G44528
TU55608 lncRNA upstream 109035 32185538 ~ 32185802 (-) True G44612
TU55611 lncRNA upstream 116724 32193227 ~ 32193465 (-) True G44615
TU55626 lncRNA upstream 208552 32285055 ~ 32285978 (-) True G44623
TU55661 lncRNA upstream 239677 32316180 ~ 32383930 (-) True G44651
TU55683 lncRNA upstream 356785 32433288 ~ 32441371 (-) True G44668
AMCG00013471 mRNA downstream 9322 32054636 ~ 32065898 (-) True AMCG00013471
AMCG00013470 mRNA downstream 183726 31870261 ~ 31891494 (-) True AMCG00013470
AMCG00013466 mRNA downstream 211886 31859120 ~ 31863334 (-) True AMCG00013466
AMCG00013467 mRNA downstream 293613 31760256 ~ 31781607 (-) True AMCG00013467
AMCG00013463 mRNA downstream 379507 31688510 ~ 31695713 (-) True AMCG00013463
AMCG00013475 mRNA upstream 25065 32101568 ~ 32116327 (-) True AMCG00013475
AMCG00013480 mRNA upstream 331870 32408373 ~ 32411868 (-) True AMCG00013480
AMCG00013482 mRNA upstream 445147 32521650 ~ 32539826 (-) True AMCG00013482
AMCG00013484 mRNA upstream 468674 32545177 ~ 32565354 (-) True AMCG00013484
AMCG00013483 mRNA upstream 495923 32572426 ~ 32581303 (-) True AMCG00013483
TU55168 other downstream 1588889 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other downstream 1588889 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other downstream 1588889 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other downstream 1588889 30483716 ~ 30486331 (-) False AMCG00013411
TU55166 other downstream 1597026 30477138 ~ 30478194 (-) False AMCG00013412
TU55745 other upstream 489257 32565760 ~ 32567952 (-) True G44719
TU55769 other upstream 545678 32622181 ~ 32623918 (-) False AMCG00013488
TU56122 other upstream 1601721 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 1616341 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 4882674 36959177 ~ 36959914 (-) True G45468

Expression Profile