RNA id: TU55623


Basic Information

Item Value
RNA id TU55623
length 146
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G44620
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32286014 ~ 32286159 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGACTTTTATCTACTTGATCTAAGACTGgggaatatgtgtgtttgtgtgcatgttgtgtgtttatgtgtgattTGATTGTGTAGGATTAATGTCTGCATCTGCCAGTTATGGAAAATATAAAAGTCATCTTCATGTGTATTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55621 lncRNA upstream 1063 32283614 ~ 32284951 (+) False AMCG00013473
TU55609 lncRNA upstream 94619 32191179 ~ 32191395 (+) True G44613
TU55590 lncRNA upstream 147437 32136230 ~ 32138577 (+) True G44598
TU55582 lncRNA upstream 228388 32053733 ~ 32057626 (+) True G44590
TU55573 lncRNA upstream 255092 32030256 ~ 32030922 (+) True G44581
TU55639 lncRNA downstream 110695 32396854 ~ 32398159 (+) False AMCG00013477
TU55727 lncRNA downstream 256476 32542635 ~ 32543676 (+) True G44702
TU55784 lncRNA downstream 369344 32655503 ~ 32655702 (+) True G44747
TU55810 lncRNA downstream 470579 32756738 ~ 32758380 (+) True G44769
TU55832 lncRNA downstream 551156 32837315 ~ 32837843 (+) True G44790
AMCG00013473 mRNA upstream 2087 32273429 ~ 32283927 (+) True AMCG00013473
AMCG00013474 mRNA upstream 59457 32226171 ~ 32226557 (+) True AMCG00013474
AMCG00013472 mRNA upstream 295838 31988690 ~ 31990176 (+) True AMCG00013472
AMCG00013469 mRNA upstream 364639 31915101 ~ 31921375 (+) True AMCG00013469
AMCG00013468 mRNA upstream 374843 31901530 ~ 31911171 (+) False AMCG00013468
AMCG00013479 mRNA downstream 59979 32346138 ~ 32389962 (+) True AMCG00013479
AMCG00013477 mRNA downstream 107659 32393818 ~ 32400452 (+) True AMCG00013477
AMCG00013478 mRNA downstream 137603 32423762 ~ 32455686 (+) False AMCG00013478
AMCG00013476 mRNA downstream 177937 32464096 ~ 32475750 (+) True AMCG00013476
AMCG00013481 mRNA downstream 203912 32490071 ~ 32494429 (+) True AMCG00013481
TU55622 other upstream 2515 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 374213 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 1508845 30776851 ~ 30777169 (+) True G44325
TU55111 other upstream 1717795 30563368 ~ 30568219 (+) True AMCG00013417
TU55098 other upstream 1790358 30490827 ~ 30495656 (+) True AMCG00013416
TU55641 other downstream 137117 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other downstream 137117 32423276 ~ 32429887 (+) True AMCG00013478
TU55933 other downstream 820133 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 1090361 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 1156235 33442394 ~ 33446921 (+) False AMCG00013516

Expression Profile