RNA id: TU55727



Basic Information


Item Value
RNA id TU55727
length 1042
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G44702
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32542635 ~ 32543676 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


agtcacATTTTTTTAGACAGGCTTTGcaacaatttcagttttattttatagctgTACCTTTGTAAAAACCtttaaactatataaaaacaaaaggtcTAACACCATTGTCAGAATAATTTGCTTTGTTCTCCTTCAAAGCAATACGCAGAATGCAATTTGCATACTCCAATCATCATCTATACCAGATTAAAACCACGAACATGGAACCAAACTCTTATGGCTGGCTTCACAGACCTCAGTTAGCACTAGTCTAAAACTACtctacttaaaataacattgggtagtccatgACTGGTGGTAGTTTGGGTCTGTAAAACCAGCTCTTAATGTACACACATTGTGAGGGACAGGAATacgaatatatatttatatcatttgTTGTATGAGCGCAAGATAAATagatgttaaaacaaatactttttaagCAATCTCCCAGGCCTCCCAGCAGTTCCATAATCTCTCATATCCTGGCAGGAAGTCCCAGTGCTTTTGTGTAAATTACATGTGGAATTAATTCTGTCCACTTGTACATTGTTTCTCTAAAATTTCAGTCTGCTGTTTCCCACAGCCTTGCAATTTAAATCctccaactacaagaaacaaaGAGTAAGTGTGCTGAAATAAGTTTAGCCTTCATTTCCAGCTGGaagttgaaagaaaaaatacttacaGTCCAGGGCAAGTTGGTTGAGGTCAGCACAATCCAGCTACAGCTTTGATAGTGACTGCTATCAATtcctaatttgtattttttgtttggtcCTGGGAAAAGCCTAACATACATTTAGGAAGTGGGGTTTCTGCCTTGGGAGCATCTAAATTGGTTCATTAAAAGGCTCTTGATCTTGACACACAGACGTCCTTCTATGATTTTCCAACTCAATATTTGATCCATTAAATTTGAGGTGTATATAGAACTGAAATTTGTAAGCCACTTGATTTGCTGCAAAAGAAAACGTGAGCCAAATATGCCTCAATTATGAGACCAACAGTCTCATTTAAATCATCAGTCTGGGTCcgaaaagaacattttaaacaNNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU55639 lncRNA upstream 144476 32396854 ~ 32398159 (+) False AMCG00013477
TU55623 lncRNA upstream 256476 32286014 ~ 32286159 (+) True G44620
TU55621 lncRNA upstream 257684 32283614 ~ 32284951 (+) False AMCG00013473
TU55609 lncRNA upstream 351240 32191179 ~ 32191395 (+) True G44613
TU55590 lncRNA upstream 404058 32136230 ~ 32138577 (+) True G44598
TU55784 lncRNA downstream 111827 32655503 ~ 32655702 (+) True G44747
TU55810 lncRNA downstream 213062 32756738 ~ 32758380 (+) True G44769
TU55832 lncRNA downstream 293639 32837315 ~ 32837843 (+) True G44790
TU55923 lncRNA downstream 540052 33083728 ~ 33088760 (+) True G44860
TU55924 lncRNA downstream 545140 33088816 ~ 33090427 (+) True G44861
AMCG00013481 mRNA upstream 48206 32490071 ~ 32494429 (+) True AMCG00013481
AMCG00013476 mRNA upstream 66885 32464096 ~ 32475750 (+) True AMCG00013476
AMCG00013478 mRNA upstream 86949 32423762 ~ 32455686 (+) False AMCG00013478
AMCG00013477 mRNA upstream 142183 32393818 ~ 32400452 (+) True AMCG00013477
AMCG00013479 mRNA upstream 152673 32346138 ~ 32389962 (+) True AMCG00013479
AMCG00013485 mRNA downstream 46052 32589728 ~ 32599218 (+) True AMCG00013485
AMCG00013487 mRNA downstream 61059 32604735 ~ 32608797 (+) True AMCG00013487
AMCG00013486 mRNA downstream 85251 32628927 ~ 32636264 (+) True AMCG00013486
AMCG00013490 mRNA downstream 98769 32642445 ~ 32656154 (+) True AMCG00013490
AMCG00013491 mRNA downstream 149498 32693174 ~ 32711904 (+) True AMCG00013491
TU55641 other upstream 112748 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 112748 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 259136 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 630834 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 1765466 30776851 ~ 30777169 (+) True G44325
TU55933 other downstream 562616 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 832844 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 898718 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 1151916 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 1570997 34114673 ~ 34114939 (+) True G45072

Expression Profile