RNA id: TU55745


Basic Information

Item Value
RNA id TU55745
length 1627
RNA type TUCP
GC content 0.46
exon number 2
gene id G44719
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32565760 ~ 32567952 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGCTCCATGTAGACGCGTTCAGTTCTTCCCCCCACAATGCAACACTCAGAGCTAAAGCAAAAAGAAGGTCGTTCGCACTTTGCGCTTCGTGCCAGTGTTTTAAGTGCTTGTTGAACCTCAATTTATGTGAAACTCAAATCAGATGGTTTTAGATGACGGGTTGTAAAAGCCTGTTCCATTGCCTGACGTAAATTGTGTGACGTATGAAGTAATTCCACTTCAAGTGCTGTGAGGTTGCGCAGCCCACGCCGGGGCTTCTCTCCATGGCGCGGCACAGCAGGCTGCAGACGCAGGTCCTGGCGCTGTTCCGGCAGCTCCTGCGCGCCGCTCAGCACAAGCCCGGCTTCAGGCCCACCATCCAGGCCGAGTTCCGCCGCAACGCCCGCCTCCCCAAGAGCGACGTCATGCACATCGAGTACCTGTACCGGCGCGGCCTGCGACAGCTGGAGCAGCTCCGGGACCACAACACCAAACAGCTGGGCGCTTTCGTCAAAACCAGAGAGCAGAGCTGACCACCTGCCCCCGGCCTCCGTTGCAATGATCAGTTGCGTTTTGTTTTAGATCTTCAAAGGGAAACGTCGGTGTCAGTTACAAGGACAGTTGTATCTGCCTGCCTTACTTGGGGAAAAACACTACTCACTCCTGAACTGAGCATCTCTGTGTTGAATTGAATGATCTGCCATCGATGAGCCATGTACACTTAAAGTCTTGAACATGTCTCACTACCGCGTTTCACTCACTACTGTGTACACGAGGAGGATAATAGAAGCACCCACCCCATATATGAACATACCTTAATTCGCAGGACATTACAGTGCCTCAGTTTTCAGCGACTCTGCAAACCattgtaaacaaacaatcaaaacgGTCTGTCTTTTTTCAGTGGAATTTGATGTCACTGTTAATAAACTATCGTTCTGTGAATCATGTATGTtttcccctctctgtccctttGCGTTTACTCATTATAACAATACAGTCATTAAGAAAAGATAGGTTGTTTGTGTTTGCCATCTCCCAGCATTTCctcttcacatttttaatttctcagatGAAGGGATTTACACTGATAAATAGTGTGTACCTAAGCACAGCTTAGTATTTGAAAGCTTccaaaagactaactctgcctcctctgccctccccttcctccagagccgctccttctcatccctggcccctaaatggtggaacgaccttcccaccgaagtcaaaacagcagagtccttgaccttctggtgcttactcaagacacatcttttcagacagtacttgtaatttagtcatttactctcctgtatgatagcacttatacaacgttttgtcatactagccttgcgttactagtactcatttattttgatgtccccttgctccctttcccttggcccttgactgtgacctaataTCTTGTCTgtactcatcagcttttacaatccaggatgtaagacctcatatattgtatacacttgtgtaaattggaatttataaaatgtattacgctttgaattgcactgtattatgtaaactggaatttgttttatgccttgaactacattgtatttgtgcatgttgtattgcacttatactttgtaagtcaccctggataagggcatctgctaata

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55728 lncRNA downstream 22083 32542648 ~ 32543677 (-) True G44703
TU55683 lncRNA downstream 124389 32433288 ~ 32441371 (-) True G44668
TU55661 lncRNA downstream 181830 32316180 ~ 32383930 (-) True G44651
TU55626 lncRNA downstream 279782 32285055 ~ 32285978 (-) True G44623
TU55611 lncRNA downstream 372295 32193227 ~ 32193465 (-) True G44615
TU55785 lncRNA upstream 87573 32655525 ~ 32655725 (-) True G44748
TU55786 lncRNA upstream 88753 32656705 ~ 32657232 (-) True G44749
TU55818 lncRNA upstream 188812 32756764 ~ 32758330 (-) True G44777
TU55856 lncRNA upstream 285304 32853256 ~ 32853765 (-) True G44803
TU55871 lncRNA upstream 366115 32934067 ~ 32938173 (-) True G44815
AMCG00013484 mRNA downstream 406 32545177 ~ 32565354 (-) True AMCG00013484
AMCG00013482 mRNA downstream 25934 32521650 ~ 32539826 (-) True AMCG00013482
AMCG00013480 mRNA downstream 153892 32408373 ~ 32411868 (-) True AMCG00013480
AMCG00013475 mRNA downstream 449433 32101568 ~ 32116327 (-) True AMCG00013475
AMCG00013471 mRNA downstream 499862 32054636 ~ 32065898 (-) True AMCG00013471
AMCG00013483 mRNA upstream 4474 32572426 ~ 32581303 (-) True AMCG00013483
AMCG00013489 mRNA upstream 41929 32609881 ~ 32620938 (-) True AMCG00013489
AMCG00013488 mRNA upstream 54201 32622153 ~ 32627904 (-) True AMCG00013488
AMCG00013496 mRNA upstream 265895 32833847 ~ 32836598 (-) True AMCG00013496
AMCG00013507 mRNA upstream 528687 33096639 ~ 33108496 (-) True AMCG00013507
TU55168 other downstream 2079429 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other downstream 2079429 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other downstream 2079429 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other downstream 2079429 30483716 ~ 30486331 (-) False AMCG00013411
TU55166 other downstream 2087566 30477138 ~ 30478194 (-) False AMCG00013412
TU55769 other upstream 54229 32622181 ~ 32623918 (-) False AMCG00013488
TU56122 other upstream 1110272 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 1124892 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 4391225 36959177 ~ 36959914 (-) True G45468
TU56784 other upstream 4562906 37130858 ~ 37133244 (-) True G45571

Expression Profile