RNA id: TU55810


Basic Information

Item Value
RNA id TU55810
length 1643
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G44769
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32756738 ~ 32758380 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtttttatttatgtttttatttttatttttgtattgttgtagttgttggtttatgtttgtttattttccagttttaacaacaacaaagaaaaaactaagagGAAGATGCCAGAGCTGAGAATAAgatggggagagacagagacagagacaggcagtgTGAAACGGTGGTCAGAGCTTAGTGACCGAGAGACAGTGAGGTAAGGGACCAGATCGGCCTTGTGACCCTGAGCTGACGTTAAAAGTACTATAAACCTGGACAGGAGTAATTGACTGGGGAGGCCTTATAATAAAGCAGTCAAAAGTATGACCAGTGCAGAAGTGGCTTGAGGATTGGTATAAATCTGATATAGTACTGTTCTGAGGGTACAGATAATCGTTTTGTGGTGACCATGCTGTTTTTGCCTGTTGAGACAGGTCAGTCTCTGATTCGAGCATCCTGTAGTGGCACTCAACTTCAGCCACGTggcagaaacacatttttcacctCCTGTGAAGTACAGGCCTACATACTAGTTCTTGTGTTGATTTTGCAGAGTATGGTAATGTGCTTCTCATTTAGAGAGTTGTAACACAAGTACTCTCTGAAGCCACTGTGCATAGCGGACATACACAACATAGAAGCCACAAAATAGCAATTTTGCttagtgtgtgttgtgtgtccaGAGTTTTTATGGTTTGCGCAATGGGTAATACTGAAGCAAGTGTAGAGTATAAATACTTTCCGAGTGTATgcgtgagtgcatgtgtgtatccTACTCATCACATTCAGACAGATGGAAGATTTTTCTGTGCCATTTCTAGCACACAGAGACAAGAGCTGGTCTCTCTCGACTCTTACTGATTCATGGTTTCAgctcatcccagaggtgttctatggcATTGCAGTCTAGACTCTCCAAAATTCTCTCCCAGATTCTTGTTGAATCGCTGAGTTCGAGCTTTGTGACTGCAATATGTTGAAACTTCTTTCAGTGCTGTCCAAAATGCCACAGAATAATCACAGCCCAGAAAAAAGGTCTCTACATAGTATTTGACCCCTGATAGAATCTGTTACTGGAAAAAGGGAAGCTTGAGCCTTTGCCTTTGGTTATAaactttgtttgtatttatgtgtggATGTGCGCGTCATACAGTGTGAATTAAGTTTATGCTTATGAAATCAGTTGGCCCATGATAACTGAATTCTAAATACAGAACAGTTCACTGTGAAACAATGAAtgatatttgaaatacaatacagatgAGATCAATGGGAATATGCTGACCTGGACAGTGACCGTGCGCACCAGAGGGCAACTCTGCGTGACCACCATTAGAGTCAGTGATTGTTCACCTTTGGAAAGACTTGGTTATATAGCAGTATGTGCATCGCATAAGTAAGATCCTTCACTAGCGGGGCTCAGACTTGCTATTATACTGTTTATGAATCTTTGTGCTACACTGTATAATGTAATCTTTTGCATcgtattctgtatttttgttaaacCAACCTATGACTTTGCCATGTAACCTTCTGCAGTTATTTCACATTGGCcaactcatttttttttttttttttctgtgagaaAGTTTGGAATTAAAGCAGGCGGGCCCatgcaagaaaatataacaTGGGGGTGTTTCATACAATTTCATTCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55784 lncRNA upstream 101036 32655503 ~ 32655702 (+) True G44747
TU55727 lncRNA upstream 213062 32542635 ~ 32543676 (+) True G44702
TU55639 lncRNA upstream 358579 32396854 ~ 32398159 (+) False AMCG00013477
TU55623 lncRNA upstream 470579 32286014 ~ 32286159 (+) True G44620
TU55621 lncRNA upstream 471787 32283614 ~ 32284951 (+) False AMCG00013473
TU55832 lncRNA downstream 78935 32837315 ~ 32837843 (+) True G44790
TU55923 lncRNA downstream 325348 33083728 ~ 33088760 (+) True G44860
TU55924 lncRNA downstream 330436 33088816 ~ 33090427 (+) True G44861
TU55928 lncRNA downstream 335922 33094302 ~ 33095508 (+) True G44865
TU55930 lncRNA downstream 342094 33100474 ~ 33100687 (+) True G44867
AMCG00013493 mRNA upstream 735 32752772 ~ 32756003 (+) True AMCG00013493
AMCG00013492 mRNA upstream 31954 32714424 ~ 32724784 (+) True AMCG00013492
AMCG00013491 mRNA upstream 44834 32693174 ~ 32711904 (+) True AMCG00013491
AMCG00013490 mRNA upstream 100584 32642445 ~ 32656154 (+) True AMCG00013490
AMCG00013486 mRNA upstream 120474 32628927 ~ 32636264 (+) True AMCG00013486
AMCG00013495 mRNA downstream 43869 32802249 ~ 32829019 (+) True AMCG00013495
AMCG00013494 mRNA downstream 79805 32838185 ~ 32843351 (+) True AMCG00013494
AMCG00013497 mRNA downstream 95246 32853626 ~ 32876130 (+) True AMCG00013497
AMCG00013500 mRNA downstream 129774 32888154 ~ 32917516 (+) True AMCG00013500
AMCG00013498 mRNA downstream 169436 32927816 ~ 32947713 (+) True AMCG00013498
TU55641 other upstream 326851 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 326851 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 473239 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 844937 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 1979569 30776851 ~ 30777169 (+) True G44325
TU55933 other downstream 347912 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 618140 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 684014 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 937212 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 1356293 34114673 ~ 34114939 (+) True G45072

Expression Profile