RNA id: TU55904


Basic Information

Item Value
RNA id TU55904
length 2938
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G44848
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33028267 ~ 33031255 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTctctttattagtttttttattattgttttttttttacacaaattaGCCACAGAGAGGCTTCTCCAGGATTTCACAGCTTGATTAAAACAGAAAGAGGAACAGAATATTGGTCCCCTCTCACAAAGCgcccaggagagagagagagagagagagagtgagagagagtgtttgtgtgtgtttgtgtgagagagagatagaaagggCGAGTAGCACACACAACATCGTCAGATCAAGGAGAGCAACAGGTATACCTGGGTGGGTGATCTtgcacacaataaaacacacccCACCACTACCCCTGCCCTCTCTGCAGGTTAACCACACAGCAGCCAAAAATAGCCATGTCTTTCCCAGCAGGTCCAGTAGAAGATTGAGCTTGCAGTTCACGGTGACAGGAGAGGGGAAGGCGGGGGGGCGACCACTGAAGATACTGTCAGCAATGTGTGTGTTGGGCAGTTGGGGGGTGTGAGGGATTGGCAGGGTTCTGGCTGTTCTGGTGACAGCTAAATGAAAAATCGCCCCACACTCTGTGGTCTATAGCTCGTGCTCGTGGCTTCTTGTCATTTCTCAAACTCGGCTCCGAGAGGCGGTTCTGCTTGTAAAGTCAAGATTGCAGAAGcaaaaacagaactgaaaagacagaaagaacaGCCAAAACAAAAGGTTTTTAGATCCGTCGCTTGCCAACTTCCTGGGACCTAGAAAGGCAGGTTCAGATATGACCCAATGAATTCAACAAATCTGGCTGTATTCGGGAAACAGCTACATTCAGGGCTGTAACCTTTTTCATGATCGGAATGGAGAGCCATTGCACTGGTGGGTTAGACTGGGAGCAGGGCTCTCTCTGATCTCATGGTTTTTCTTCTATTGCACATTCGGAAATCTGTCCGGCAGGATCCTATACAGCAATGACTGCCAGTCAGGCCTGAATATACTCAATACGAGATATGACCAGTAACTAAATGAGAGGGTAGTACAAAGGCTATAACCCCCACTCTCATCTGTCCCTCTGGTGAGGATGTACAGGGCTGGTCAGGGTTTTGCCTGGTaccactaattaaaaaaaagagagagagaaagtaaaaaaaaaaaatgaccagCCTTTATTTAAGATTGACACTTTCAGAGAATTATACTAGATATcatttaaacactttattcttgTATGTTTTGAAATGAACAGGTGCCTATTACAGATTAACCAGTGCGTAGGAGATCAGAGGAAAGCTGTTCAGTCTCAGTCTTAACCAGGCTGGCAGTAGCTCCCTATCACAACTCGCCGTGACTGGGCCTAGAATGGCCATACACGATTTAGGTCCACGCACTCACAACTGTCGGTGTAAACCGTCTGAAACAGAAACCATGTGACATAGATAAGCAGATGAGCAGGTGGAGAATTGCGAACCTCCATCTCCAGTACAGATCTCCGTCAAGAGTCACACATTCAACTGGGTTGTGGATCCTGTAGTCCAGAGTCTTGGGGATTTCCTTCTCCTTGTCCCTTGGAGTCCTAAATGAGCTGCCTTGTGCTGTAGCAGTCAGTTTGGCAAGAGTCTCGGGTTGGTGGGGGATGGGTCCTGTCTCCCACCCCCATGAAAACCCCAGTCACAGATGTAGAGATGGGTCAGCCaagactacaaaaaaaaaaagtctctttCCTTCAAAGATCTCTCGGGCTGAAGTcaataatacaatcaaaataataataataataataataacaataacaataacaacaacaataataataataatataaaagaataaacaacaataatacaaaataaatcaatatatacatcCATCACTCCCTGTGAGTTACACACTTGTGCGTATGTTGCACAGAAGGGCAAAGTGAAAGGCTTCAGGCACACCTAGCTGTATGCAGTGGATTCTAGTCGCAGTTCTTCAGAACAAAAGCTTAGCTGACCTAACACCctgcccaccccccaccccccaccctgacGCTCCCTGCCCCACGTCCCAGCATTTGCGCTCAAGGTTAAATGCTCTCTGACAATCACGGCCACGTGTGTGTTTGGTGGAAGTCTTGCTCGGCCTGTCTCGGCGCCGTTATCGGCCACAGAAGCTGCAAGTGAAGGAAAAGGGAAGGTGAGAGATCGGCCAAACGGCAGTCAAACATGCTACTAGGGTCAAAGCAACAGCACCGTGGATGTAAGCTCCCTAATCGCCAGAGTGGTAGTCAGCTCAAAGACACAGGCCAAATTCACAGTCTGATTTTGCACGGCAGCTTTCAAGATTCAAAATGAAAGAGATAGATGAAGCTTGCAAATAAGCCTTGCTTATCTCTAAATTTGTCCTTTTTTCCAGTTCTGTGAAACTAacgttttgattttatttgatcaaattatatatagagTGTACGGCGTCGATTGTGTGGCTGACAATTATTGTTGCCccttctggaaaataaaaaaatctgttgccTAAACGAGGGGTGGGGGGTAACATGCCTGTGTGCATTACTGCCCCCTCAGAGGGATCTGCAGTCTGGTCAGCAGGGAGAAAGCCAGAGATTGGATTAAGCAGGAAACATGCAATAGGGTACAAGTTCATTAAGAATAAAAGAACAACCAATGAGGTATTAAGTGTTCATTTCACAGGGtacatttacattgcattttgggatttatttaattttaattttttgcttCCCTTTAACCCAACATCATTcaattttcacattattttcggGACTAGGCCACAGCGGGATGATAGGTCTCTAGGATTCCGGCAAAGCAGAATGGTTTCAGGTCTGTGGTGGCATTCGGTCCCAGCCAGCCCTGACCCCCCCCTTCATCAGCTCTGATCAATCAGAATGCACTGAACCCAGCTAGATGTGCCTGCTTTGGTTTCCTGGGAATAACACCGTCAAAATGTCTCTGCAACAAAGCCGGTTTTCCTCTCATTTTGGC

Function

GO:

id name namespace
GO:0065009 regulation of molecular function biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55871 lncRNA downstream 90094 32934067 ~ 32938173 (-) True G44815
TU55856 lncRNA downstream 174502 32853256 ~ 32853765 (-) True G44803
TU55818 lncRNA downstream 269937 32756764 ~ 32758330 (-) True G44777
TU55786 lncRNA downstream 371035 32656705 ~ 32657232 (-) True G44749
TU55785 lncRNA downstream 372542 32655525 ~ 32655725 (-) True G44748
TU55925 lncRNA upstream 25398 33056653 ~ 33056863 (-) True G44862
TU55927 lncRNA upstream 57647 33088902 ~ 33090447 (-) True G44864
TU55935 lncRNA upstream 63142 33094397 ~ 33095418 (-) True G44872
TU56003 lncRNA upstream 311754 33343009 ~ 33348520 (-) True G44936
TU56007 lncRNA upstream 384278 33415533 ~ 33416219 (-) True G44940
AMCG00013496 mRNA downstream 191669 32833847 ~ 32836598 (-) True AMCG00013496
AMCG00013488 mRNA downstream 400363 32622153 ~ 32627904 (-) True AMCG00013488
AMCG00013489 mRNA downstream 407329 32609881 ~ 32620938 (-) True AMCG00013489
AMCG00013483 mRNA downstream 446964 32572426 ~ 32581303 (-) True AMCG00013483
AMCG00013484 mRNA downstream 462913 32545177 ~ 32565354 (-) True AMCG00013484
AMCG00013507 mRNA upstream 65384 33096639 ~ 33108496 (-) True AMCG00013507
AMCG00013508 mRNA upstream 90717 33121972 ~ 33122871 (-) True AMCG00013508
AMCG00013506 mRNA upstream 98799 33130054 ~ 33143388 (-) True AMCG00013506
AMCG00013511 mRNA upstream 214909 33246164 ~ 33263876 (-) True AMCG00013511
AMCG00013513 mRNA upstream 323326 33354581 ~ 33366875 (-) True AMCG00013513
TU55769 other downstream 404349 32622181 ~ 32623918 (-) False AMCG00013488
TU55745 other downstream 460315 32565760 ~ 32567952 (-) True G44719
TU55173 other downstream 2541936 30483519 ~ 30486331 (-) True AMCG00013411
TU56122 other upstream 646969 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 661589 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 3927922 36959177 ~ 36959914 (-) True G45468
TU56784 other upstream 4099603 37130858 ~ 37133244 (-) True G45571
TU56785 other upstream 4099603 37130858 ~ 37223824 (-) False G45571

Expression Profile