RNA id: TU55923


Basic Information

Item Value
RNA id TU55923
length 4964
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G44860
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33083728 ~ 33088760 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGTACTTTGATTAAAGGGGAATGAAATAACTTTTGATTTTCAAATGGGACAGCTGGGAATCGAGGCAGTGAGTGTTTTTGTTAGCACTGTATGTCAGTAGTGTGTTGCTAGTTGATTCTTAACAAGGGAGACATACAGACTGCAGCTACAGACCAGTACAAAGCTGCAGTACAGGCTTGGGGTGTGTGCCTGCAATTGCCATTGCCATGAGGGAAGGGGTTTCCATCGCACATGTCCCATAAGGCGCCTCCTACCAGTAAGGAGACTCGGGCACAGAGTTGCACCCTGGAGATCTTGTAGGCAGAAATCTAATCACCCCATCTGGTGTCTGTTCCAATGGTCGGACTTCTTCTTCTCCCCATTGCTGTTTTTGTCTCCCTACACTGGCTGCACGAGAAGAAAGCTGGGAGATGCAGCGATCCCACAGGAAATTGAAAAAGAGGAGGAGAATTCAGAGTTTTACtacaaagtgttttatttatttatttatttatttatttgtattatcatttttttacaggaaaaaagcaaacaaccaccatgtatttatttatgtttctcagTGCTGTTTTCCTTCCAAATCAATCACCGGACAATTTTTAATTCAAGGGCTAATAGGTGCTTCtgagttttttaatttatttattttttattttttgtatactaGCAGGtatcttttctctttttaaagaaaaaaataattaaaaagagcGCTGTTATGTAGGAGTAAGTGGTATTTTGAATATCTCCCATCTCCCTGAAGTCAGGTACACTTGACTGAGCAGTCTGTGTGGTCTACTGTGTGCTTTTCCTGTTCTTTCATTGCTTAGGTGTTGCCAATCTACTGAGTAGCTCTCCTTGATTCTCTACTGTTGACATTAGATGATTGGCCCTCTTTAGGGCTATTCACACTACAGCCTTTATTTGATGCATATTTTAACCCAACAAGCACCCCCTTCAGTGTATTATGAACTGTTAAGAGGCTTATGATCTGATGCAGTTCATTCGCATGTTTTAAATAAGCTGCGCAGTACATTCATACCTTTCAACCTCCTATAATCTGCCTGCCTTGGGATTTTCTGATGATCTTAAAACCATTGATAATCATGTAGTCATTCTTTAACCTTTAATCATGAGCTTGTAAGCTGAATAGGtttctaattttgcatttatatttaaaaaaaaaaaaaagactaaattGAACAATGACTTCATGACTTGTTGCTGCACTGCCTAATAGATGCGTCTTGTGTCTGTATGGAATTTCATCCGTTTTTTTTCTAGCCttacaacagcaaaaaaagaaagaacgtaAGGGATTACACAGGGCCGGAACCATTGAGCATCCAAGCCCCTAGATTGTTCtatgtttaaagtttttttagGACCTTCTGCAAAGCTTCTGTAAAGCACACAATCTGGCAAACTTTGTCTCGGTGTAATTATTCAGGTTGTTTCCACTGAACCTTAGGCATTAGTCTGCATTGGCTTTGGCATCTTTGGGCTACAGAAATCTGAATCAACGGCTTGATTTTAACTCTGTAGTGtccaaaaacaaatccatttgtTTATGCCCCTTTTAAATGACCCATCTGACTGAAATTCACTTTCTCTTAATACATGGACAAAGAACATCCAGGACACGATTTAATTCAAACATATCAAAGCGTTTGTACAATAAGAACTAAGCGCTCCGGAGACGGCCAGTCAGGAAGActcatctaaagtttttctGAAGAATATCCTATCATATAGAAGCTTACTCCCTTGGTTGCTGATTGACTATATTGACCTCAGTCAGGTTACTAAGCTACCCTAAACTACATCTCTTGTCTTCTTCTTTGTCTTTTACTCTCTATATGTACTtagattaaattgtttttctaGAAACGGGCTGCACAGAAGCTATCTTGCAGTAACAATGGTGCAAATAGAACAGATTTGGCATCTAGACCGGTCGGTGTCCCGCCTCACAATAAATAGAGATTTGTGTAGATGCGGATACAAACGAGTGAATGTGagtatgacaaaaataaaagataatgtCTTGCCTAAGGCGCTGAGGAATTATATTGAAGAAAGAACAGATGGCTCGCACACTTGCTAAAACACTGCACAGTTATGAGAGAGATCCTTGATGAATTGAAATGTTGACCTGGATTCGGCCTGGATGACTATGTGTGGAGCATGTCTAATAAGTGTGTGGTGTATCTATCTTTTCCACAATAGATTGAGTAGCTGGCAGGAATTCCAGAGTCAGGGATCACCCCATAACGCACTTTCAGCTTTCAGAAACTTACACTGGGGTGAGTGACAGTGCACAGTTTCTGAGCCTCAGTCTGCAGTAAATCCACACCTTTTTTGAGGACAGTCTTCTAACATTGgaagtacattaaaaataatcataaaaaaacccTAATAAATATACATGATTGAGAGCTTGTTAATCATTTCAGAATTTGCTTTGGTTGGGTGTTCCAGCAAACCAAAAGAATAAATGCTTCGGACTACAAGACGCTGAAGTCAATTAGAGAGGTTGCTCTGTACATGATTTAGACTGATtggaaaaaagaggaaaaaaggcaaacaaaagcCGGGACTGAATCAGGTAGTTTGTTTAGCCCCAAGGCACCGGGAAATTGGAACTGCACTCTCCGCTGCTCCCGTTTATCAAACTGTGCCGCCACTCCTGTCACACAGTGCCACCGAAATAAGCTCCTTAAAACCCGGAGCAGAATTTCCCTAGCCGGCAAATCTGGGCTTTATTATTCGAGGAGAGAGGGATCACACCATATCAATGAGCACATACTCAAAACAGACATATGGAGGCAGGAGGTAATATGGCCAGCTttgaaagggagggagaggggagaggttaggggaagtaaaataaattaaaaaaataaatggaattgtATTTTCCTGCTTGGTATAGAACCATTAATGACAGGAACAGCACCAAACCACGACTGCACACAGATCTGGCAAGAAGCGTGAGGCCAAACCCATCTGTACAGGTTTGACAGAGCCCCCTTAAATCATCTGTGTTTTACGTTTCTGATTAGTCAACTCCTCATCCAAAAAAGATCGAATCCTTATTATATTGGAGACAAATGCATATCACTAACTGAACAGCGATATTTGACACCTGGCAAAATACGGACAACAAGTGTGTCTGACCCCTGGTGTGGTGCATGCTGGGTTAATACCTGGGGTTAATGCTAATCTGCCAGTTTTCCACCTCTTGACACCCCGGGGATCTGTCTGGTGTGCAGCCCGAGCAGATACAATATTAATGCCATAACCCTTCTGACTGTCAGGAGCCACAGTGCCTCTTCAGCATCTCTTCAGTGATTCAGATGCGCACGGCCCGCCAATTGTGCATTGTGCGTTAGTCAGCCTTGTGTGAGGCATTTAATGAGTGGAAGCTGTCAGACGGAAAACGGCAACAGGGAGCGCTGCCACTCACTCTACCCGACGTTTCCACCCCTCAGGAAAGTGCCAACGCAGGTGCTGGATGGTCCACAGTCCAGTTCCTTGTGTGGATCACGCTGAATTAGTGGgggacacattttgttttttaatcaattaagcaagacTCTCTTGTCCAATTAAGGGCATTCTGGACTGTGTGGGACTGTTGGGTATTCAGCTGCTTGTTCCAAGTAATTTCCTAAATGGCTGAATTGATCAAGACCCACTTAATTGATGTCCTGAGCAAACTCTTTTCTTCTGAAGTCTCCAGCCCTGGTGCTGGAGATTTACACTGTACAGCATCTTTAGGTCTTCATTCCAGCCATGCTCCCGTATACTTCATTGAAACCATATTTGGCTGATGTAGTCGAATTTTAATGGAATGTTAAGCCACCGATTTGAAGCCTTCTATACAACCTGGGGTGACTGGGATTATTCAGGTACAGCACAAGTGTTGAAGACCACTGTTATAGTCAACAGGGGAAAGATACCACCACATCTGGTTAGAGTTgaggtttttctgtttttctttctatatgTAAACTGGAGTCCCACACATGCTGTTAGCTTGGTAGCTGTAACTGAGCAATTAgtattaaatgtgattttaaacagGCCTGCTTTAATTATTGCAGTAtgacatatttagttttgttttctcaatccGTATGTCCTGGCGAGGGAAGTACTGTCACTCAAACTCAAAAACTATTTCATTGAATCTTGCATATCAGTTTAAGATGAACAAAATGcacttgcaaaagaaaaaattgcTCAGAGAAACAAAAGGGATTAGAAAGAAAACCGTAAAGATAGGCATAGTTCATAGTAGTTCATCCCTGGTTTTCAATGTCAAGAAGGTGCAAGTTTTCCCTACTGTGGCCTtactcagtcagtcagagtcAGTTTACTAATGACCTTCGtgttaatgtttctgtttttctgaaaagTCGGGAGGGGAAGCAATAACCATATAAACTTGTTCAGGCTGTGCAGCAAAAGGACATGGACAATTTttcatgcttgtttgtttgtaattgcTTCGTTAAATCTATGGCTTTATTAAGAAAGCGACAAGGCTGACTGTTAATTATTAGGCAGATgaataattgaaaatggaagAACAGAGAAATTCATCACACCTTATCTGCAGCACGGCAAATAATGAATTTGTTCCCTGTCTGCTTTCTCCTCAGCCATGTTATATAGTCTCCTACATGCTTCACTACCTATTTGCTGTGAAAGTGGGTTATTATTCCATTTGTTTGTCAGCCATTCTTTCCTGACTGATTCAGTGCAAAATGCTTTCTAAACAGATCTTTCTAGCTTAATTgtgagaggaggaggtggggagaGCTGGATGATCACACGTTATTGCCTGGCAGTAATTGGAACGAATCCGGGCAAAAGCACTCCCGCTTCACATGTCAGCTGCCGTTAATTTCTTTTGAGCGCAAAGGCGGTAtacaaaatgagaaataaacacaaa

Function

GO:

id name namespace
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55832 lncRNA upstream 245885 32837315 ~ 32837843 (+) True G44790
TU55810 lncRNA upstream 325348 32756738 ~ 32758380 (+) True G44769
TU55784 lncRNA upstream 428026 32655503 ~ 32655702 (+) True G44747
TU55727 lncRNA upstream 540052 32542635 ~ 32543676 (+) True G44702
TU55639 lncRNA upstream 685569 32396854 ~ 32398159 (+) False AMCG00013477
TU55924 lncRNA downstream 56 33088816 ~ 33090427 (+) True G44861
TU55928 lncRNA downstream 5542 33094302 ~ 33095508 (+) True G44865
TU55930 lncRNA downstream 11714 33100474 ~ 33100687 (+) True G44867
TU55931 lncRNA downstream 13879 33102639 ~ 33102873 (+) True G44868
TU55932 lncRNA downstream 14407 33103167 ~ 33103392 (+) True G44869
AMCG00013503 mRNA upstream 317 33080737 ~ 33083411 (+) True AMCG00013503
AMCG00013505 mRNA upstream 22448 33056761 ~ 33061280 (+) True AMCG00013505
AMCG00013504 mRNA upstream 38374 33032612 ~ 33045354 (+) True AMCG00013504
AMCG00013501 mRNA upstream 61928 33015315 ~ 33021800 (+) True AMCG00013501
AMCG00013502 mRNA upstream 87644 32977931 ~ 32996084 (+) True AMCG00013502
AMCG00013509 mRNA downstream 103875 33192635 ~ 33239625 (+) True AMCG00013509
AMCG00013510 mRNA downstream 183966 33272726 ~ 33284978 (+) True AMCG00013510
AMCG00013512 mRNA downstream 240551 33329311 ~ 33347695 (+) True AMCG00013512
AMCG00013515 mRNA downstream 296357 33385117 ~ 33412841 (+) True AMCG00013515
AMCG00013516 mRNA downstream 354034 33442794 ~ 33449093 (+) True AMCG00013516
TU55641 other upstream 653841 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 653841 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 800229 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 1171927 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 2306559 30776851 ~ 30777169 (+) True G44325
TU55933 other downstream 17532 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 287760 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 353634 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 606832 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 1025913 34114673 ~ 34114939 (+) True G45072

Expression Profile