RNA id: TU55933



Basic Information


Item Value
RNA id TU55933
length 304
RNA type TUCP
GC content 0.58
exon number 1
gene id G44870
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33106292 ~ 33106595 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGGGCAGCGTGGGTGGCTTGTGTGGCCATGGCCAGGTGCCCATACCTCCACACGTCGCTGCTCTTGGAGAACAGCGACAGCTTGATGACCTCGGGGGCCATCCAGGCGTATGTGCCCGCTGCGCTCATCTTGGTGGTCTTGTGCCACTCGCGTGCCAGCCCGAAATCCGTGATCTTCAGGGTCTTACAGGACAGTTCGTCATTCTCAAATTGCTCCAGAATCAGGACTGTGGGAGAGAGCgatagggagggagagagtcagACAGAGAGATCCCACTCTCAGTTGGATCTCAGTGCAATGTCAT

Function


GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU55932 lncRNA upstream 2900 33103167 ~ 33103392 (+) True G44869
TU55931 lncRNA upstream 3419 33102639 ~ 33102873 (+) True G44868
TU55930 lncRNA upstream 5605 33100474 ~ 33100687 (+) True G44867
TU55928 lncRNA upstream 10784 33094302 ~ 33095508 (+) True G44865
TU55924 lncRNA upstream 15865 33088816 ~ 33090427 (+) True G44861
TU55934 lncRNA downstream 15425 33122020 ~ 33125449 (+) True G44871
TU56025 lncRNA downstream 333240 33439835 ~ 33441164 (+) True G44954
TU56062 lncRNA downstream 426177 33532772 ~ 33533155 (+) True G44983
TU56191 lncRNA downstream 1826611 34933206 ~ 34933787 (+) True G45100
TU56200 lncRNA downstream 1944262 35050857 ~ 35057957 (+) True G45108
AMCG00013503 mRNA upstream 22881 33080737 ~ 33083411 (+) True AMCG00013503
AMCG00013505 mRNA upstream 45012 33056761 ~ 33061280 (+) True AMCG00013505
AMCG00013504 mRNA upstream 60938 33032612 ~ 33045354 (+) True AMCG00013504
AMCG00013501 mRNA upstream 84492 33015315 ~ 33021800 (+) True AMCG00013501
AMCG00013502 mRNA upstream 110208 32977931 ~ 32996084 (+) True AMCG00013502
AMCG00013509 mRNA downstream 86040 33192635 ~ 33239625 (+) True AMCG00013509
AMCG00013510 mRNA downstream 166131 33272726 ~ 33284978 (+) True AMCG00013510
AMCG00013512 mRNA downstream 222716 33329311 ~ 33347695 (+) True AMCG00013512
AMCG00013515 mRNA downstream 278522 33385117 ~ 33412841 (+) True AMCG00013515
AMCG00013516 mRNA downstream 336199 33442794 ~ 33449093 (+) True AMCG00013516
TU55641 other upstream 676405 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 676405 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 822793 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 1194491 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 2329123 30776851 ~ 30777169 (+) True G44325
TU55990 other downstream 269925 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 335799 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 588997 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 1008078 34114673 ~ 34114939 (+) True G45072
TU56293 other downstream 2228295 35334890 ~ 35338052 (+) True G45174

Expression Profile