RNA id: TU55934


Basic Information

Item Value
RNA id TU55934
length 3430
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G44871
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33122020 ~ 33125449 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGGAGTGGGGGAATTTGCGGTACTCACTGTTGCTGGACTTGAGGTCTCGGTGGATGATGGGCACGATGGTCTCGTTGTGCAGGTAGTTCATACCGGTGGCGATCTGCACGGCCCAGTTGACCAACACACGGGGGGGCACTTTCTTGCCGGCTAGTGCACGGTTCAGGGCTCCCCCCCGGGCGTACTCCATCACCAGGCACAGGTTGGGCTCCCTCATGCAGACGCCCCGCAGCGCGATGATGTTGGGGTGCCGTAGCATCCAAAAGAGCCGGGCCTCCTGGCGCACGTTCTCAGCCGTGACGCTGATGTCCTCGTCAGGGTCCTGCCGGGCCGCCTTGACTGCCACCTCCTCGCCGCCCCACACACCCTTGTACACCTTCCCAAAGCCACCAGCGCCAATGATCTCCTCCAGGCGCAGCTGGGAGAAGTCGATTTCCAATGGCACAGGGCACTCACGTAGCAGGGAGCCCTGGATCTTGGTGTAGTTGGGGTCACGGGTCACGTAGTTGCTGGGGAAGATGCCCACTTTGTCCTTGATCTTGCCCGTCCACCAGCCCTCGTCACCGGATACCTTGGAGTCCTTGGAGAGCACCTCAAGCACGTCCCCTCGCCGTAGCGTCAGCTCCTCATCCGCCGTGGCCTCGTAGTCGAACACTGCTGTCCAGAAGGGGTTCCCGGCGGGGGGGTGGTGGCTGCAGTCCGGGGAGCTGGACGAAAGCGTAGAAGAATTCCAGCTGCCGTTCTCCGCCCCCCCTGAGTGGGGGCCCTCCCCACGTGCCGGTCCACAGCCACAGTTAGAGCAGGGGGACTGGGATGAGCCGCAGCTCATTTTACTGACGGATTGATCCATCGGGAGGCGATGGCGAGTGTGTGGAGAATCTCAGGCCTGCCGGGCATTGACATGAGCGTGCTCTGTAAAATCCATGGTGGCGACTCAGTAAAAACAGCCTTCACAGatccattattattgttttttataatttttttaaatcttgtatCAGTATCACTTAGCATTTATTATTGATGACAGTTCCTAAGGGAGGggaaagggagggggggggttgtctTGAAATGTGCTTAGGGTAATTCCATTGCTCTCTGAGCGGCTGTGCTTATAAAATCTCATAAGAAtcctgacttttttttctttttcttcaaagcATCCATCTGGTAGTGGGCAGAAACTAAGTGCCTTTCTGTCAtagcattaaaagaaaaagggttaaaataatgaatacaactATTCCATTCAGCCGTTTCAATTAGTCAGAGCATAGGAGACTGCACAGCCCCAAACCGGTGGTATGTTAATCTTTACAAATAAGAGGAGGAGAACAGGCAGCTGACGGTGGCCTATAATCAGCAACAATACCATGAACCTGTCTTTAGTTATCACTTTGTTTACTATGGACCAAATAAATAGCAACGGTCGGAGTATCACATTACAAATGCGCCTGTATACACCTTGcacagcagggagagagagagacactgcaAAAGCATCAGAagaataaataactattttctgCACTGAACGTGCAATATTTCCTTGACGGCTACATTTTTCGCTCCATTATctaaaacatgcatttgcaaTGACTAGACTTCCCCCTGTACCgttaaaaccaaataaatagtGTTAAGCATATAAAGACAGCACCCTGACCGACCACCGTTTTACTATCTTATCTGATACGGAGGATTAGCATTCTGAAATGCAGAgcccaataaaaacaaatctgttctgTATATTGTAAAGATCAAATAACCAGAGGTACAGTTAGTGTTACACTGCAATGCCTTTCCAGCGCTGGCAcgttgtgttattgttttaaggATATGATACCAGCTTGTCAAACAGGGAGCACAGCATCTCGCCTATGGGCTATTCCAAAAGACAATCACTCCCTTTACGTTGCTGGTGAAACACGTTTCTAAACTGAACAATTACCCTGATAAAGCCCATACATTACTAAGTGTAAGCCAGTTTAATGTCTTTAAATAgcgactgagagagagaaatcacaCGTCCATTTTAAGACTGGCAATGACGGCGGAAACCTCGCACTTTGACTTCGTCGATTTCCATAGTGCTACAGTGCCTAGGcatgtacatgtatgtacagtatgtgtagATGTATGCACAGCGGCCGTCTGTTATTTCAGCACTGGGTAGAGCAAACCAGGCACGGCCCCTGAGATTAATATTTACCTGATTCACAGAGAAAGGTAAACAACTGCACGGATGGGGCCACAGAAAACTACAGCAGTGTGTTGGCGGCTTGTTGTTTCCCCATTGCCCTTCTGATTATTATCAATCTCCTTTGGCCCCCCTCCTGCAAACGCAGCGATCATCCCCTCAAGTTATTTTCCTTCACGGGGCTGGCGAGATCAGACGCTGTACATCCAGGACGTGTTTCACAGAGACGCTGCGGGCTCCTGAGTCTGGCGCTGGGCACTATTTGTATCCCGGTCCGAAGCCGCCTGGTTGCTGCCTAACGAAATCCTCCCGGTAACAGCGTGGCCCATTTATTCCTTGAGATAACGAGCAGTCACGGGAAAGGGGCTCCACCATCTTCACGGTATCAACCCGCATGTCATCCCCAATGACTTACTCGTCGCCGTCCCCCTCCCGATTAGATGCCGCATTTCAGATCCCCCGTTTCAATTCTCACATCCCTCTATTCTCCAGGCACGGGCGTGCGTCTGTCGCTGCCAACACCACTCAAAACAAAGAAGCGAGCCGTCTTTGTGAAGTCTTTAACCGTTTGAGATCCACGGTGGCCCGTCTGTCCAGCGGCACTGGGCTCTACTGATGTCCCATTCAGTCGCCCGAGCTGTCAGCTGCTCCGGCTGACATTGTATCCAAATACACCGGCTCGGGCGCAGGGCATGCTGGGAGATGTAGTCCTGAAAGCGAGCAGGCGCTGCTCCACAACTCTGCCCGGATACAGCGCTCCCGTGAGGGAAATATACAGAAATTAATACAGAGGGCGACAATAACGCGTCTGGTGTGTAAGTGGCCGGTCTATGCGGggaacaaatgtatattttttaataagcaaGTTTTAATTCATCGCGCAGTCTGATTTGAAAGGTTGAGAGTAAGGGAATGCCGGCTACCTGCCACCTTGTCCAGTCACCTGTGTCACTTCCTGCTATGCTTCCGTGCGTCACCTTTGCTCGGATTCACTGTCGAGGTCCAGCGCCAAGGTGTAGATCAGCTCTAAACACCTCTTTTTGTGCtgcacttgttttttctttgacgTGCCCTCCAGCTACGCCTGTTTATTGGGCATCGGCTGCTACTGTTTACGTTTCCATTCCCAGTCTCCCCCTTCTCCAGAGCTGTCACTTTAAGGCTCGTCTCGGGGACTGCAATGAGGGCGGGCGGCCCGACGCGCGTCCCGGCTCGGACCCGACGGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55932 lncRNA upstream 18628 33103167 ~ 33103392 (+) True G44869
TU55931 lncRNA upstream 19147 33102639 ~ 33102873 (+) True G44868
TU55930 lncRNA upstream 21333 33100474 ~ 33100687 (+) True G44867
TU55928 lncRNA upstream 26512 33094302 ~ 33095508 (+) True G44865
TU55924 lncRNA upstream 31593 33088816 ~ 33090427 (+) True G44861
TU56025 lncRNA downstream 314386 33439835 ~ 33441164 (+) True G44954
TU56062 lncRNA downstream 407323 33532772 ~ 33533155 (+) True G44983
TU56191 lncRNA downstream 1807757 34933206 ~ 34933787 (+) True G45100
TU56200 lncRNA downstream 1925408 35050857 ~ 35057957 (+) True G45108
TU56231 lncRNA downstream 1994630 35120079 ~ 35120344 (+) True G45124
AMCG00013503 mRNA upstream 38609 33080737 ~ 33083411 (+) True AMCG00013503
AMCG00013505 mRNA upstream 60740 33056761 ~ 33061280 (+) True AMCG00013505
AMCG00013504 mRNA upstream 76666 33032612 ~ 33045354 (+) True AMCG00013504
AMCG00013501 mRNA upstream 100220 33015315 ~ 33021800 (+) True AMCG00013501
AMCG00013502 mRNA upstream 125936 32977931 ~ 32996084 (+) True AMCG00013502
AMCG00013509 mRNA downstream 67186 33192635 ~ 33239625 (+) True AMCG00013509
AMCG00013510 mRNA downstream 147277 33272726 ~ 33284978 (+) True AMCG00013510
AMCG00013512 mRNA downstream 203862 33329311 ~ 33347695 (+) True AMCG00013512
AMCG00013515 mRNA downstream 259668 33385117 ~ 33412841 (+) True AMCG00013515
AMCG00013516 mRNA downstream 317345 33442794 ~ 33449093 (+) True AMCG00013516
TU55933 other upstream 15425 33106292 ~ 33106595 (+) True G44870
TU55641 other upstream 692133 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 692133 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 838521 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 1210219 31904968 ~ 31911801 (+) True AMCG00013468
TU55990 other downstream 251071 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 316945 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 570143 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 989224 34114673 ~ 34114939 (+) True G45072
TU56293 other downstream 2209441 35334890 ~ 35338052 (+) True G45174

Expression Profile