RNA id: TU56025


Basic Information

Item Value
RNA id TU56025
length 1330
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G44954
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33439835 ~ 33441164 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgaaaacaaaacaactattcagattattattagttattttattagatattacagcaaaacaaacacaaatacaacaaacaaaccttcCAAATTAACAGGTAACATGTATAGGACTAAAGAGCTGGGGGTCATACTTCTTTCAATGTGATTTAGCAggacacacatttatttgttttggaagtTGCTCTTTCCAGGTTTATTGGTGTAATCCAGTAATAAAAACTTCAGCTAGTTTTGATCAGGAGTCTCTGTACACAGAGAATAGCTTTGCTGTCAGAACTACTTGGTTTTCTTAAGGGTtacttacaaacacacacattaaacagtGCTGGGACTACAGGTAGAGCAATGTAGGGAACAGAACAATGAGGAACCCAGGGATTGAGATCCAGAGACCTACCCACCACATCCTTGAGTGTAAGTATTTCAGTCCCATGTGCCcacaatatatatgaatatatagatAGAAGGACAGATATTTACAGAAAtagataaaaatataaactttgaCTGTTCTTATCATTTTTAGTACATTTTCAGTCCCATGTGCTGGtggttttgtttgggtttttgtaaataaagtgcttaatttttaaagtttaattctGATTGTGCCTCCTACCTCCTGGGTGCCAgctcacaatatatataaatatatagatagaaggacagatatatatatatatatatacaaatagatataaataaaaactgcctGTCCTGTCAAATCATGTATATAGGGGAGGGGGGGCACAAGATATTCCTGCTTTGGGCCCCCAATGGGCTAAAACCGGCTCTGACTGGGAACATACTGTAGTTATGTTTCAAAGCACAGAACATAGTCAATGAAGGGAGAGGTTGATTTGGCAGTAGTTACCGGTTAAACCTGGTCGATCAGGTCAGACAGTCTTATTCCACAGTATATAAGGGCACTTCATGGTCAGGAGggtgttattttgtgtgtgtgtgggtgtgtgtgtgtgtgtgtgtgtcctcccCGCTCTGTGCCAGGCAGTGGTCACTTCTGCCTCACAGTCCCAGTGTCTGTGGCTTCACCTGGCAGCCCAGCAGAGAGTTCCCAGCCTCCAAATACTGTGTCATGCTGagccctgaaacacacagcacaaacacacacaggagcaTCAATACACAGTCACCACGACCCCCCAtcaacacacacagtgcacactACTGGACTGACACAGCGGGACACATCCGGCACTACTGAAGGCACACAGAGTCAATCAATCACAGGGACATACAGTGTGGGACCAGTTGCTTAAACATAGACTAAGTCCTTGTCTTGGTATGATGACGGAGTGCGGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55934 lncRNA upstream 314386 33122020 ~ 33125449 (+) True G44871
TU55932 lncRNA upstream 336443 33103167 ~ 33103392 (+) True G44869
TU55931 lncRNA upstream 336962 33102639 ~ 33102873 (+) True G44868
TU55930 lncRNA upstream 339148 33100474 ~ 33100687 (+) True G44867
TU55928 lncRNA upstream 344327 33094302 ~ 33095508 (+) True G44865
TU56062 lncRNA downstream 91608 33532772 ~ 33533155 (+) True G44983
TU56191 lncRNA downstream 1492042 34933206 ~ 34933787 (+) True G45100
TU56200 lncRNA downstream 1609693 35050857 ~ 35057957 (+) True G45108
TU56231 lncRNA downstream 1678915 35120079 ~ 35120344 (+) True G45124
TU56236 lncRNA downstream 1700258 35141422 ~ 35142529 (+) True G45129
AMCG00013515 mRNA upstream 26994 33385117 ~ 33412841 (+) True AMCG00013515
AMCG00013512 mRNA upstream 92140 33329311 ~ 33347695 (+) True AMCG00013512
AMCG00013510 mRNA upstream 154857 33272726 ~ 33284978 (+) True AMCG00013510
AMCG00013509 mRNA upstream 200210 33192635 ~ 33239625 (+) True AMCG00013509
AMCG00013503 mRNA upstream 356424 33080737 ~ 33083411 (+) True AMCG00013503
AMCG00013516 mRNA downstream 1630 33442794 ~ 33449093 (+) True AMCG00013516
AMCG00013514 mRNA downstream 10853 33452017 ~ 33464680 (+) True AMCG00013514
AMCG00013520 mRNA downstream 75991 33517155 ~ 33521234 (+) True AMCG00013520
AMCG00013519 mRNA downstream 96055 33537219 ~ 33538322 (+) True AMCG00013519
AMCG00013523 mRNA downstream 141390 33582554 ~ 33585179 (+) True AMCG00013523
TU55990 other upstream 45687 33376520 ~ 33394148 (+) False AMCG00013515
TU55933 other upstream 333240 33106292 ~ 33106595 (+) True G44870
TU55641 other upstream 1009948 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 1009948 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 1156336 32273268 ~ 32283499 (+) False AMCG00013473
TU56031 other downstream 1230 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 254428 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 673509 34114673 ~ 34114939 (+) True G45072
TU56293 other downstream 1893726 35334890 ~ 35338052 (+) True G45174
TU56332 other downstream 2214138 35655302 ~ 35659833 (+) True G45209

Expression Profile