RNA id: TU56128


Basic Information

Item Value
RNA id TU56128
length 924
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G45043
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33689446 ~ 33690369 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCCAGGCAGCGTGACAGGAAGCGGGTGGAGATGCTGAGGCGAGGGTTCAGGAAGATGTTCTCTGTGGACGGCTTCAGGTCCCGCAGGTCTGTGTCAAACTTCTCTGGAGGGAGGAATGGGGGGAGAAGGGTGGGaggtatgcatttattaatccTGCAACTATCTTGTTTGATGGACTCTCACTGCACAACTTTCAAACTGAAACCACAAGTCCCTTGCCCTTGTCGTATAAAACAACAGGGCTCTAGTGAGAAGCCCACTGGGTTGTGATGCAACCCAGAACTCCCTGCTGCTCTCTAGTTGCAGCAGACAGGGCTGCAGTGGGCCGCAAGCTGTGGGCCAGACATACCATTGGAGAGGTCGTCCCCCAGCATGCCAAAGTGGTGCAGCAGAGAAGTCTCCTGTTCTGGGGTCATGCCGGGGCGAGgtcctgcctcctcctcctcttcctcgtcaACTCCAGAGCTGCCCGCTGAGCTCACCTGACTCAGGGAATCCACATCTGAGAACGCAAGAGCGAGAGAACGATGAAATATGAAACCTAGAGAAATATGCCTATGCGTTTGTGATCTGTGTGTGCCACATTCCGGGATTCGGTCCGTGCATGTGTCTGCGTTCCCCAGAGAGAGGTGGCACTATGGCTCACCGTCTTGGTGCTGATCCTGGCTGAAGGCCTGGCTGCCAGCCGAGCCCACGCAGCAGGCGCTGTCCGGGCTGAGCCCCTCCACTCCCCAGGCGCCCCGCCTCCGCACCGTGCCCTCCTTACACAGCTCCTTCACATCAAAGTCACTGtggtgacacacacacacacacacatacacatacattacagcacagcacaatgcCTATATTGTTATAGTTCAGAGAATCCTTAAAGAGATCAGTAATTCAAAAGACATACAATATCGGTTACTAGTTACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56127 lncRNA downstream 23 33689095 ~ 33689423 (-) True G45042
TU56126 lncRNA downstream 515 33687822 ~ 33688931 (-) True G45041
TU56125 lncRNA downstream 3380 33685739 ~ 33686066 (-) True G45040
TU56124 lncRNA downstream 4548 33684389 ~ 33684898 (-) True G45039
TU56123 lncRNA downstream 6365 33682823 ~ 33683081 (-) True G45038
TU56133 lncRNA upstream 23670 33714039 ~ 33715806 (-) True G45048
TU56140 lncRNA upstream 193077 33883446 ~ 33883745 (-) True G45055
TU56148 lncRNA upstream 279673 33970042 ~ 33970319 (-) True G45062
TU56166 lncRNA upstream 628521 34318890 ~ 34319514 (-) True G45076
TU56172 lncRNA upstream 790181 34480550 ~ 34480787 (-) True G45082
AMCG00013528 mRNA downstream 79826 33596330 ~ 33609620 (-) True AMCG00013528
AMCG00013527 mRNA downstream 112842 33557031 ~ 33576604 (-) True AMCG00013527
AMCG00013518 mRNA downstream 187699 33468860 ~ 33501747 (-) True AMCG00013518
AMCG00013517 mRNA downstream 248510 33429105 ~ 33440936 (-) True AMCG00013517
AMCG00013513 mRNA downstream 322571 33354581 ~ 33366875 (-) True AMCG00013513
AMCG00013531 mRNA upstream 5193 33695562 ~ 33699712 (-) False AMCG00013531
AMCG00013534 mRNA upstream 842061 34532430 ~ 34544065 (-) True AMCG00013534
AMCG00013535 mRNA upstream 853708 34544077 ~ 34648703 (-) True AMCG00013535
AMCG00013538 mRNA upstream 1301513 34991882 ~ 34992115 (-) True AMCG00013538
AMCG00013536 mRNA upstream 1365248 35055617 ~ 35057435 (-) True AMCG00013536
TU56122 other downstream 10539 33678224 ~ 33678907 (-) True G45037
TU55769 other downstream 1065528 32622181 ~ 32623918 (-) False AMCG00013488
TU55745 other downstream 1121494 32565760 ~ 32567952 (-) True G44719
TU55169 other downstream 3203115 30483716 ~ 30486331 (-) False AMCG00013411
TU56130 other upstream 2475 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 3268808 36959177 ~ 36959914 (-) True G45468
TU56784 other upstream 3440489 37130858 ~ 37133244 (-) True G45571
TU56785 other upstream 3440489 37130858 ~ 37223824 (-) False G45571
TU56844 other upstream 3792547 37482916 ~ 37483608 (-) True G45614

Expression Profile