RNA id: TU56231



Basic Information


Item Value
RNA id TU56231
length 266
lncRNA type intronic
GC content 0.49
exon number 1
gene id G45124
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 35120079 ~ 35120344 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gTCGCTTGGCCCACTGTtctctgccaattctgagctgatggcactgctggacatcttccgattgtgaagggaagtaagcatgatgtgtctttcatctgctgcagtaagtttccttggccaaccactgtgtctacggtcctcaaagTTGCCCGTTtcattgtgcttcttcaaaagagcttggacagcacatctggaaacccctgtctgccttgaaatgtctgcctgggagagacctttctgatgcagtataactaccttgtgtcttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU56200 lncRNA upstream 62122 35050857 ~ 35057957 (+) True G45108
TU56191 lncRNA upstream 186292 34933206 ~ 34933787 (+) True G45100
TU56062 lncRNA upstream 1586924 33532772 ~ 33533155 (+) True G44983
TU56025 lncRNA upstream 1678915 33439835 ~ 33441164 (+) True G44954
TU55934 lncRNA upstream 1994630 33122020 ~ 33125449 (+) True G44871
TU56236 lncRNA downstream 21078 35141422 ~ 35142529 (+) True G45129
TU56242 lncRNA downstream 54891 35175235 ~ 35175446 (+) True G45135
TU56259 lncRNA downstream 106484 35226828 ~ 35227029 (+) True G45150
TU56272 lncRNA downstream 159561 35279905 ~ 35280457 (+) True G45162
TU56283 lncRNA downstream 179528 35299872 ~ 35302781 (+) True G45170
AMCG00013533 mRNA upstream 1035962 34081183 ~ 34084117 (+) True AMCG00013533
AMCG00013532 mRNA upstream 1061084 34057613 ~ 34058995 (+) True AMCG00013532
AMCG00013530 mRNA upstream 1426182 33670735 ~ 33693897 (+) True AMCG00013530
AMCG00013526 mRNA upstream 1450786 33664077 ~ 33669293 (+) True AMCG00013526
AMCG00013525 mRNA upstream 1458306 33647849 ~ 33661773 (+) True AMCG00013525
AMCG00013539 mRNA downstream 18005 35138349 ~ 35141343 (+) True AMCG00013539
AMCG00013543 mRNA downstream 94290 35214634 ~ 35217638 (+) True AMCG00013543
AMCG00013546 mRNA downstream 187020 35307364 ~ 35309555 (+) True AMCG00013546
AMCG00013545 mRNA downstream 205647 35325991 ~ 35331505 (+) True AMCG00013545
AMCG00013549 mRNA downstream 686457 35806801 ~ 35814022 (+) True AMCG00013549
TU56162 other upstream 1005140 34114673 ~ 34114939 (+) True G45072
TU56113 other upstream 1420534 33695592 ~ 33699545 (+) True G45029
TU56031 other upstream 1673158 33442394 ~ 33446921 (+) False AMCG00013516
TU55990 other upstream 1725931 33376520 ~ 33394148 (+) False AMCG00013515
TU55933 other upstream 2013484 33106292 ~ 33106595 (+) True G44870
TU56293 other downstream 214546 35334890 ~ 35338052 (+) True G45174
TU56332 other downstream 534958 35655302 ~ 35659833 (+) True G45209
TU56494 other downstream 1217918 36338262 ~ 36370087 (+) True AMCG00013566
TU56506 other downstream 1283010 36403354 ~ 36403901 (+) True G45338
TU56545 other downstream 1510633 36630977 ~ 36638148 (+) False AMCG00013571

Expression Profile