RNA id: TU56283


Basic Information

Item Value
RNA id TU56283
length 2784
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G45170
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 35299872 ~ 35302781 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GatgaacacacaacacagctgcTTCCTATAAACTACAGTAGAGAGCAAAGGGAAAGGACAAATGCaaccataacaaaacaaaaaaaatcaaacaattaagaaaaagtaaACTATCTTGGGAGCCAACCAAGGTctacttttatttaaagttcatgcttttccatttcacttaccattgtctgtgtttttccgGTGTTTTTACAGCTTTGATATTGCAAACACATTTGTCCTTCACGTTCCCTAAACTATAGACTAAATGGTTTAATAAGAAGAACATTTAAATGCTTGGCTTGGAAATAATCTTTGGGATGAATATAATCTTGATGCCCTGCTAACCTTGCAAGTGGCGTCCGCAAGTACGCATGCTCCTCTGGACACTTCCGAAAgtgattctgttctgttttttgtagcGTTGGGTTTGCATAATGGGTGCACGcttacaatcttttttttttttttttttttacttggacAACATGACTTTCCCCATCACGAAAGAAAattaaggcaaaataaataaataaatacagcatttccttttcatttcctaCTAATAGTACATTGTGagtaaaaagagaaagacaagaAACTAGACAGATAAGAGCATTGTAAATGAGCAAACATGCATCAAAGGCTGTTGGGTGAATCCCTGTTACCATAGAAAACCTCCATGGAGCACATTGTTGTCTGTGTATGCCTGCTTATCTTCAGTCTTTTAGAGGGTAAGACAGTCAACTCAGAAACAAACACCTACTGAGTTTGTTTTAGGACTGTCAGACCGCTTtgaaaccatgaaaaacagagAGGACAGGACTAGCAACACTAGCCAGAACTCATTACTATTGCATCATAAAGTTCTCTATGTTGTTGCGTTGTAGTAGCAACGTAGCTGGAGCCTCACAACAACATGGTGACGTTGCTATTACAGCTTAACCAGGTAATTCTGCTGACAGAATCCTATATCCAGTAATGCTCTCCTGTATCCTATAATGAAGTTTACTTTTCAGGTTGGGGGGGGAAGAGAACTCTTAATTCATTCTGTTGAAATCAGGTTTCATGAAAGAGATACCATAATACACCTAGCAACAAACCACTTGACTGTAAAGGGAGGcaaacacaacattttgttttagttttgttttgtttgattttaaaaagcaaacaaacaagcttAATTTTATGTctgcaaaaaatatacaaactacAAGTAGTGTAAAATCCTTCTTAAGACTGTCTACATTCAATACTGTAGTAGAGAAGTCTCCTAGTCCTCAAAATAGCTTATTTACAAAGCAgctaatgattaatttaaaattccaaataaatagAACTAGGGATACTTGAAACTActtatattttcaataattaaaacgGGTAGGTGTGACACTTAATGTCACCACTCAAATTCATATTCTATTATCTGCTGCCCCATATTTTCCAGGATATGGTCTCATCTAGTGAAGTAGCTAAAAATGCCACAAAAACAACTGCATGAACAGTACAAGGATGACATTCCCATGAGGATTTCAAAAAAcactgtctctcagtgtctgaaACCCAAGACTAGGCCACATGCCTTTCTGCAAGTGTCTAACACATAACTTATGTTAACATTTCAAAGTTAGCAATGATGCTGTCTGACAGGACCCAAATGGGCTGACAACACAATTGTCGACTGACTTAATTTACTTGATTTTTAGAATTGTGACACTATTGTTGCTTTACCACAAGGATGCTGAGTGCCGTCTTCTCACAGGGTTTGACTCCTTTTCCCAAAACAGCTGTTATAGAAAGGAAAGCACTGCATAAACAGTACTTGGCTGGGTGGTACTGAACCTTAAAATAACATAGTGTAGAACAATCCCCACTGTTAGAATCAGTTATTGACTAATTAGCTAGTTATTGACAGTTTCAAAACCCCAAACCTTTTCATCCCTAAAAGAAGAGCATTAAAACAATCTACCTTGAAATGTGTCTCGGGAAAATTAGTCTTTTTCTTAGTCTCTTTCTATGGTGGCAGTTGGTGAAGactcaggtttttttttttttttacctcaccTTTGCCAAGTGAACCTAATAAGGGACTACTGGTTTCCTCCTCAGCTATCGCGCATCTGAATTGGAAGAGTTCTGAGGCAAGGTAAGTGCGTCCTTCCTTTGGCTGTCCCGGTTGAAATGTTAAGAACCATAaccccacccctccctcagCTTCCATAGCCCCTCAAGAGAGCAACCGAAGAGTAAAAGATCATATCGACATGGGATAGGTGGATAAAGCATACCTGGATTGTGCTGGTGGTGCAGGGGAAAGGTCAAAGTTCCCACAGTGCTCTCCAACCAGGTTTGGCAGCAGCCAGAGTGGAAGAATGATGTTGGAAACAGTTTGGGATGAAACCTCAGTACTTCACTGATCGAAATTGAAAATGCCCTACAAAGAACTCAAACCCACACCCCCGTCCCCATCCCATACAAGCTAAGTTATCTTTTATTGTAAATCCAAATCCTCCTCTTTTGCTTGTCTAAAGTGTGGCTGGTTGGCTGGCTTTGGGGAGCAGAAGGGAAAGTCAGTCGGCTCATTTGTGCTGGCAGCTGATGGAGAGCCCTTTGAGCAACACGCCTTTCCGGGGGGAAGTAGGCGGCTGCTCTGGGAGGGGGGCACCGGGGGGATCCGGACGGCCTTCCCGCTGGGGTTGGGGTGCGGGGTCAGGGGCGCTGGGGTTGGGCGTCTCGCTGGCGGGGGGCGACCCCTGGTGCACCTCCAGGAGCGAGACAGTCCAGGAAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56272 lncRNA upstream 19415 35279905 ~ 35280457 (+) True G45162
TU56259 lncRNA upstream 72843 35226828 ~ 35227029 (+) True G45150
TU56242 lncRNA upstream 124426 35175235 ~ 35175446 (+) True G45135
TU56236 lncRNA upstream 157343 35141422 ~ 35142529 (+) True G45129
TU56231 lncRNA upstream 179528 35120079 ~ 35120344 (+) True G45124
TU56329 lncRNA downstream 248198 35550979 ~ 35551223 (+) True G45207
TU56352 lncRNA downstream 655326 35958107 ~ 35959584 (+) True G45226
TU56353 lncRNA downstream 665335 35968116 ~ 35968417 (+) True G45227
TU56354 lncRNA downstream 665888 35968669 ~ 35970696 (+) True G45228
TU56355 lncRNA downstream 670697 35973478 ~ 35973877 (+) True G45229
AMCG00013543 mRNA upstream 82234 35214634 ~ 35217638 (+) True AMCG00013543
AMCG00013539 mRNA upstream 158529 35138349 ~ 35141343 (+) True AMCG00013539
AMCG00013540 mRNA upstream 170810 35118409 ~ 35129062 (+) True AMCG00013540
AMCG00013533 mRNA upstream 1215755 34081183 ~ 34084117 (+) True AMCG00013533
AMCG00013532 mRNA upstream 1240877 34057613 ~ 34058995 (+) True AMCG00013532
AMCG00013546 mRNA downstream 4583 35307364 ~ 35309555 (+) True AMCG00013546
AMCG00013545 mRNA downstream 23210 35325991 ~ 35331505 (+) True AMCG00013545
AMCG00013549 mRNA downstream 504020 35806801 ~ 35814022 (+) True AMCG00013549
AMCG00013552 mRNA downstream 563004 35865785 ~ 35869903 (+) True AMCG00013552
AMCG00013556 mRNA downstream 596310 35899091 ~ 35908745 (+) True AMCG00013556
TU56162 other upstream 1184933 34114673 ~ 34114939 (+) True G45072
TU56113 other upstream 1600327 33695592 ~ 33699545 (+) True G45029
TU56031 other upstream 1852951 33442394 ~ 33446921 (+) False AMCG00013516
TU55990 other upstream 1905724 33376520 ~ 33394148 (+) False AMCG00013515
TU55933 other upstream 2193277 33106292 ~ 33106595 (+) True G44870
TU56293 other downstream 32109 35334890 ~ 35338052 (+) True G45174
TU56332 other downstream 352521 35655302 ~ 35659833 (+) True G45209
TU56494 other downstream 1035481 36338262 ~ 36370087 (+) True AMCG00013566
TU56506 other downstream 1100573 36403354 ~ 36403901 (+) True G45338
TU56545 other downstream 1328196 36630977 ~ 36638148 (+) False AMCG00013571

Expression Profile