RNA id: TU56352


Basic Information

Item Value
RNA id TU56352
length 1478
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G45226
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 35958107 ~ 35959584 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCAGAAAAATGgtcgtaagccagtgaatccgtcaactgtgaacTTCTCCGTcatgtgcaccttgctaccccagccaaaCATGCACACCCTGGTCTGTTTCCTggttccttttataggggaagtggtgggcggggctatggccatcaggagccctgctggcttctggggtttggagtcttggaggagatgttttgtagtctcctccactgaaagacccgccctgaccccagccttgcctctcacactgccacaacacacacacatgttttcTATCAAAACGTATGTAAGGCTGAGCACTAGCCTGGCCTGAAGCTTTAGGGGATAGGTATGGGTGGGAGTTTCGCTCCCTTTCTTATGGCCTGTTAGCAGTcttataaaaaacatgttttatagcCAAAAGGTCTATTAGCCGGCTTTTGAGAGTTAGCGTTTTGAGACCATTTGATTCCATCAGTTGTGCTATGCTAACGaaacaattaattcaaatgtCTTCAAACTGGACGCACAGAATTGAAAAGGTTTTGATCGATTCGTATGAATCTGAATGAGTAAGCAATCAGGctgaaatggcaaaataaacaaagtaccCCTTTAAGTTGCTTTTACCCTCCCTAAGATGGTTTTCTTTAACACTTCATTAACAGCTGGTACCAACTTTTCTGAGTAACTCCACAAATGGTCATCTCGGATTAGGTCTGACTGGTGCAGATCATGTCTCTGAGGCCGCCTGATGTGGTACATCCGTGCAAAATTCTGTTGGACTCTTATTGAATGATATTTAAAGTTCAAAAGTCCGTGGACTGTGACTTCCTGCACTAACCTGGGGTTCACAATGATTTTGATAGGATTCAAAATCCCTGCTGCATTTGGCTCTCGGTAAATGTGCTCCAGCACGTTAACCCCAGGGATGTCTTTCCATTCCTGCAAGAGGAACCTGCCACTCTTTTCTTTGATGTTTTTAGGGAAAACATGGTTCTCGAACTCAAAACCTGTGTCTGGACCGTTCTCTTGTGTAAGGTTTTCCATCATCTCATTCCAGGTCCTGTGCTTTAGGGGTAGAATGATCTCATCAATGTCATTCAGGGCTACGTATTTGGTCTTGTACATGTACCTGTACACACAGTCATTGAGGGCTGCCAGCTGGCCGTAGTAGTGCAGATCTCCAGGAAATTCAGAAGGGTGCCATCCACCAGAAACTTTGATGTAGGACGTGATCAGCCAAGGTATGATGTCCACAAGGCCTGTGCTGTGGTAGAAATCTAGCACACTTTGGATTTCTGGGCTACAGCTGTTTTTGTAGATGGCCACTTTCTGGACCCCTAGCAGTTTGTACATCTCAATAGTCTGCACAAGCTGCAAGACATTGTTGAAATTTCCAAACATGGTCGAAATGCACACTGTGAAGTTGTAAGGGAAGGTGTTGgtctggggctggggctggctGTTGTGTATTGGAAGGAAAGACACATCTTGGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56329 lncRNA upstream 406884 35550979 ~ 35551223 (+) True G45207
TU56283 lncRNA upstream 655326 35299872 ~ 35302781 (+) True G45170
TU56272 lncRNA upstream 677650 35279905 ~ 35280457 (+) True G45162
TU56259 lncRNA upstream 731078 35226828 ~ 35227029 (+) True G45150
TU56242 lncRNA upstream 782661 35175235 ~ 35175446 (+) True G45135
TU56353 lncRNA downstream 8532 35968116 ~ 35968417 (+) True G45227
TU56354 lncRNA downstream 9085 35968669 ~ 35970696 (+) True G45228
TU56355 lncRNA downstream 13894 35973478 ~ 35973877 (+) True G45229
TU56356 lncRNA downstream 14654 35974238 ~ 35984433 (+) True G45230
TU56416 lncRNA downstream 105246 36064830 ~ 36065978 (+) False AMCG00013560
AMCG00013556 mRNA upstream 49362 35899091 ~ 35908745 (+) True AMCG00013556
AMCG00013552 mRNA upstream 88204 35865785 ~ 35869903 (+) True AMCG00013552
AMCG00013549 mRNA upstream 144085 35806801 ~ 35814022 (+) True AMCG00013549
AMCG00013545 mRNA upstream 626602 35325991 ~ 35331505 (+) True AMCG00013545
AMCG00013546 mRNA upstream 648552 35307364 ~ 35309555 (+) True AMCG00013546
AMCG00013560 mRNA downstream 101171 36060755 ~ 36085843 (+) True AMCG00013560
AMCG00013558 mRNA downstream 137571 36097155 ~ 36111063 (+) True AMCG00013558
AMCG00013559 mRNA downstream 159982 36119566 ~ 36132259 (+) True AMCG00013559
AMCG00013566 mRNA downstream 403361 36362945 ~ 36363151 (+) False AMCG00013566
AMCG00013564 mRNA downstream 421385 36380969 ~ 36403018 (+) True AMCG00013564
TU56332 other upstream 298274 35655302 ~ 35659833 (+) True G45209
TU56293 other upstream 620055 35334890 ~ 35338052 (+) True G45174
TU56162 other upstream 1843168 34114673 ~ 34114939 (+) True G45072
TU56113 other upstream 2258562 33695592 ~ 33699545 (+) True G45029
TU56031 other upstream 2511186 33442394 ~ 33446921 (+) False AMCG00013516
TU56494 other downstream 378678 36338262 ~ 36370087 (+) True AMCG00013566
TU56506 other downstream 443770 36403354 ~ 36403901 (+) True G45338
TU56545 other downstream 671393 36630977 ~ 36638148 (+) False AMCG00013571
TU56576 other downstream 777093 36736677 ~ 36738479 (+) True G45406
TU56611 other downstream 915323 36874907 ~ 36877603 (+) True G45439

Expression Profile