RNA id: TU56354



Basic Information


Item Value
RNA id TU56354
length 675
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G45228
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 35968669 ~ 35970696 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTCTCACTTGGCTGTGATTTGGCAaccctgaaaaacaaacaaaaaatatcactGTAACACCCAGCTATAAAGGGATAAAGGGAGTGTTGATTATACAGCCAGTTTTTCACAGTGGATTGAGGTTCATTTCTAATGCTCCAAATTcttcattaacaaaacaaaaattaaaacagcattctTCTATGCAATTTCATATAGCGTGCAtAATTGATTTCAATCCCTGTTACAGGATTCATCCGTCAGCTAATTCTTCACTAACGTAGTGCTGTGATCTTCCGTAAGCTTCAGCTGTCGGAAGCCTTCAGACAAAAGAAGAAGGCCCTTTTCGCAAACACAGCAATGAAGGGTGGATCCCTATACAAGCAAATAAAAGCAATTGTAGACTGCAGAATATGAAACAGGGCAATGAAGGGATTCAAGCTAGTTACAACAAACTGAGAGACAACAGAACAGGTAATTTCCTTACCTCTGGAAGGCATCAGTAACCGTTTCTTCATATGGcctagcacacacacacccaCACCTTCTATGCCGTTGTGTTGCTCATAGCTGCGTTTGCCCAGGATGGTAGTGGAGCCGTGGTTGATGACGGGTCCCACCTTGGCTACGCTGGCACTCACTGGATGTGGCGCGAGGCTAATGGCAGGTTTCACTGGCTCGGGTTTTACGTACGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU56353 lncRNA upstream 252 35968116 ~ 35968417 (+) True G45227
TU56352 lncRNA upstream 9085 35958107 ~ 35959584 (+) True G45226
TU56329 lncRNA upstream 417446 35550979 ~ 35551223 (+) True G45207
TU56283 lncRNA upstream 665888 35299872 ~ 35302781 (+) True G45170
TU56272 lncRNA upstream 688212 35279905 ~ 35280457 (+) True G45162
TU56355 lncRNA downstream 2782 35973478 ~ 35973877 (+) True G45229
TU56356 lncRNA downstream 3542 35974238 ~ 35984433 (+) True G45230
TU56416 lncRNA downstream 94134 36064830 ~ 36065978 (+) False AMCG00013560
TU56419 lncRNA downstream 143359 36114055 ~ 36117331 (+) True G45276
TU56449 lncRNA downstream 189438 36160134 ~ 36187942 (+) True G45301
AMCG00013556 mRNA upstream 59924 35899091 ~ 35908745 (+) True AMCG00013556
AMCG00013552 mRNA upstream 98766 35865785 ~ 35869903 (+) True AMCG00013552
AMCG00013549 mRNA upstream 154647 35806801 ~ 35814022 (+) True AMCG00013549
AMCG00013545 mRNA upstream 637164 35325991 ~ 35331505 (+) True AMCG00013545
AMCG00013546 mRNA upstream 659114 35307364 ~ 35309555 (+) True AMCG00013546
AMCG00013560 mRNA downstream 90059 36060755 ~ 36085843 (+) True AMCG00013560
AMCG00013558 mRNA downstream 126459 36097155 ~ 36111063 (+) True AMCG00013558
AMCG00013559 mRNA downstream 148870 36119566 ~ 36132259 (+) True AMCG00013559
AMCG00013566 mRNA downstream 392249 36362945 ~ 36363151 (+) False AMCG00013566
AMCG00013564 mRNA downstream 410273 36380969 ~ 36403018 (+) True AMCG00013564
TU56332 other upstream 308836 35655302 ~ 35659833 (+) True G45209
TU56293 other upstream 630617 35334890 ~ 35338052 (+) True G45174
TU56162 other upstream 1853730 34114673 ~ 34114939 (+) True G45072
TU56113 other upstream 2269124 33695592 ~ 33699545 (+) True G45029
TU56031 other upstream 2521748 33442394 ~ 33446921 (+) False AMCG00013516
TU56494 other downstream 367566 36338262 ~ 36370087 (+) True AMCG00013566
TU56506 other downstream 432658 36403354 ~ 36403901 (+) True G45338
TU56545 other downstream 660281 36630977 ~ 36638148 (+) False AMCG00013571
TU56576 other downstream 765981 36736677 ~ 36738479 (+) True G45406
TU56611 other downstream 904211 36874907 ~ 36877603 (+) True G45439

Expression Profile