RNA id: TU56506



Basic Information


Item Value
RNA id TU56506
length 548
RNA type TUCP
GC content 0.44
exon number 1
gene id G45338
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36403354 ~ 36403901 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tttgccttcaaaacagcatcaattttgtatgcatatagtcaggtgtatgattaaacaattataccaaatcggtgctaatgatcattcattcaatatgtaggttgaaacccAGTCATTAACtgacacagaaacagctgtgtaggaggaataaaactcgGTGAGGagcagccaaactcagctaacaaggtgaggttgctgaagacagtttactgtcaaaagtcatacaccatggcaagaccaagcacagcaacaagacacaaggtagttatactgcatcagcaaggtctctcccaggcagaaattcaAGGCAGatgggtttccagatgtgctgtccaagctcttttgaagaagcacaaagaaacgggcaacgttgaggatcgtagacacagtggtcggccaaggaaacttactgcagcagatgaaagacacatcatgcttacttcccttcacaatcggaagatgtccagcagtgccatcagctcagaattggcagaaaacagtgggaccctagtacacccatctactgtcagGAGAaatctggtcagaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU56449 lncRNA upstream 215412 36160134 ~ 36187942 (+) True G45301
TU56419 lncRNA upstream 286023 36114055 ~ 36117331 (+) True G45276
TU56416 lncRNA upstream 337376 36064830 ~ 36065978 (+) False AMCG00013560
TU56356 lncRNA upstream 418921 35974238 ~ 35984433 (+) True G45230
TU56355 lncRNA upstream 429477 35973478 ~ 35973877 (+) True G45229
TU56511 lncRNA downstream 2142 36406043 ~ 36408735 (+) True G45343
TU56543 lncRNA downstream 209834 36613735 ~ 36613942 (+) True G45373
TU56546 lncRNA downstream 235741 36639642 ~ 36641119 (+) False AMCG00013571
TU56565 lncRNA downstream 294897 36698798 ~ 36700063 (+) True G45395
TU56567 lncRNA downstream 300751 36704652 ~ 36704893 (+) True G45397
AMCG00013564 mRNA upstream 336 36380969 ~ 36403018 (+) True AMCG00013564
AMCG00013566 mRNA upstream 40203 36362945 ~ 36363151 (+) False AMCG00013566
AMCG00013559 mRNA upstream 271095 36119566 ~ 36132259 (+) True AMCG00013559
AMCG00013558 mRNA upstream 292291 36097155 ~ 36111063 (+) True AMCG00013558
AMCG00013560 mRNA upstream 317511 36060755 ~ 36085843 (+) True AMCG00013560
AMCG00013568 mRNA downstream 30985 36434886 ~ 36444730 (+) True AMCG00013568
AMCG00013567 mRNA downstream 58951 36462852 ~ 36476392 (+) True AMCG00013567
AMCG00013571 mRNA downstream 216501 36620402 ~ 36646066 (+) True AMCG00013571
AMCG00013573 mRNA downstream 288251 36692152 ~ 36693141 (+) True AMCG00013573
AMCG00013570 mRNA downstream 305474 36709375 ~ 36712969 (+) True AMCG00013570
TU56494 other upstream 33267 36338262 ~ 36370087 (+) True AMCG00013566
TU56332 other upstream 743521 35655302 ~ 35659833 (+) True G45209
TU56293 other upstream 1065302 35334890 ~ 35338052 (+) True G45174
TU56162 other upstream 2288415 34114673 ~ 34114939 (+) True G45072
TU56113 other upstream 2703809 33695592 ~ 33699545 (+) True G45029
TU56545 other downstream 227076 36630977 ~ 36638148 (+) False AMCG00013571
TU56576 other downstream 332776 36736677 ~ 36738479 (+) True G45406
TU56611 other downstream 471006 36874907 ~ 36877603 (+) True G45439
TU56708 other downstream 709601 37113502 ~ 37120571 (+) False AMCG00013587
TU56759 other downstream 911585 37315486 ~ 37320331 (+) False AMCG00013595

Expression Profile