RNA id: TU56565


Basic Information

Item Value
RNA id TU56565
length 1266
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G45395
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36698798 ~ 36700063 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGTGGCAAGCTATTACCTCAGAAGGCAGTTCTACTGTATCTATAATTACTCCCTGTATAATTTACCCAGTGCGTATGATTTAATCTTTCCTGCTAAAAACCCCCAACAGTAGctgaatacagttttaaaacaacaaaacaaagaatgtaTACAAACCCAGCCCCCACTCTATCCCACTTTTATgcttaaaaattacaaatgttcCTATCTGAATGCATGATCTCCGCAAATAACTGATAGCAAATAAGATGGAATGTTCCACATAGCACCAAGATTGAGGAAGCAATTTGTATTTGGGCAGCTATGTACTATCCcccaacatttattttgtattattcctaAAGTGAAGCCATGAGtgggcagggtggggggggtctgtTTCAGTACAACTTGTAATCAAAGGCTTTTcatcaccttttctttcttttcaatgtCTTCATCCTCAGCAGTGTGCACTACTGTCCAGCTAAGAAGAATTCTCTTAAAAGAACTGTGCTTGAGTAAAACCTCAACTATTGGTATTAGGTGATTAAATACTATTCCCTTTGTGGTACTCCAGACTGTATGGGAAAACACCACCCACCACACCAAATCTATTTCCTTTCTTAGAAAGAGGCAGCTTTGTTTGCCACTATTTGTTCCTTAATTTTTCTTGGCACACATAACAGCAGTGGTCATACACACAGAAACTAAAGGCGTGAAAACAGTgattaaattgctttttttgtctgtgattgtttgtctgttttgtttgaatgaGCCTTCTTGAAAGACTATATATCCGCctagaaatacaattattaaactCGTTTTTGTGAGACCTGAGGAATGAAACCGAATGCCTAAATTATGTGTAACTAATGGTATTTAATAGTTCCTTACTAGACCATCATTAGCAATTTTAATACAACTTCATTGTTCAGCTTTATTTTGAGTTACTGGTGATGCTTTAAACAGAGATGGTACTATTGAGAACCACTGAAAACTGTGCATAATTACAATTCCTAttcttgcatacattttttatatatatattaggatgAAGCTgttcagtaaaattaaaatcatccACTTGACTGTGATTCCACTGGCTTTGTTTTGTGGTCTTTCTTGAATCTTTGtctgatttgtttgtgtgttttgttttcatttgttgttttttgtagcaGTATTGGAAACACAGGTTTCTGTTTCCAATCAGCAACCACcacaaaaagataaagaaaattatttcttatttgttcaATGCTGTAGAGGAGagggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56546 lncRNA upstream 57679 36639642 ~ 36641119 (+) False AMCG00013571
TU56543 lncRNA upstream 84856 36613735 ~ 36613942 (+) True G45373
TU56511 lncRNA upstream 290063 36406043 ~ 36408735 (+) True G45343
TU56449 lncRNA upstream 510856 36160134 ~ 36187942 (+) True G45301
TU56419 lncRNA upstream 581467 36114055 ~ 36117331 (+) True G45276
TU56567 lncRNA downstream 4589 36704652 ~ 36704893 (+) True G45397
TU56573 lncRNA downstream 19589 36719652 ~ 36719989 (+) True G45403
TU56575 lncRNA downstream 27887 36727950 ~ 36729956 (+) True G45405
TU56578 lncRNA downstream 82506 36782569 ~ 36783620 (+) True G45408
TU56685 lncRNA downstream 363894 37063957 ~ 37064264 (+) True G45499
AMCG00013573 mRNA upstream 5657 36692152 ~ 36693141 (+) True AMCG00013573
AMCG00013571 mRNA upstream 52732 36620402 ~ 36646066 (+) True AMCG00013571
AMCG00013567 mRNA upstream 222406 36462852 ~ 36476392 (+) True AMCG00013567
AMCG00013568 mRNA upstream 254068 36434886 ~ 36444730 (+) True AMCG00013568
AMCG00013564 mRNA upstream 295780 36380969 ~ 36403018 (+) True AMCG00013564
AMCG00013570 mRNA downstream 9312 36709375 ~ 36712969 (+) True AMCG00013570
AMCG00013574 mRNA downstream 93978 36794041 ~ 36797976 (+) True AMCG00013574
AMCG00013576 mRNA downstream 106695 36806758 ~ 36810451 (+) True AMCG00013576
AMCG00013575 mRNA downstream 143465 36843528 ~ 36860797 (+) True AMCG00013575
AMCG00013583 mRNA downstream 277209 36977272 ~ 37013396 (+) True AMCG00013583
TU56545 other upstream 60650 36630977 ~ 36638148 (+) False AMCG00013571
TU56506 other upstream 294897 36403354 ~ 36403901 (+) True G45338
TU56494 other upstream 328711 36338262 ~ 36370087 (+) True AMCG00013566
TU56332 other upstream 1038965 35655302 ~ 35659833 (+) True G45209
TU56293 other upstream 1360746 35334890 ~ 35338052 (+) True G45174
TU56576 other downstream 36614 36736677 ~ 36738479 (+) True G45406
TU56611 other downstream 174844 36874907 ~ 36877603 (+) True G45439
TU56708 other downstream 413439 37113502 ~ 37120571 (+) False AMCG00013587
TU56759 other downstream 615423 37315486 ~ 37320331 (+) False AMCG00013595
TU57084 other downstream 1354841 38054904 ~ 38058834 (+) False AMCG00013629

Expression Profile