RNA id: TU56575


Basic Information

Item Value
RNA id TU56575
length 2007
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G45405
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36727950 ~ 36729956 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCgccgctgttgttgtttttgaaaaataatagttataataataataataaaaaaaaatatttaatatatattagcaCTAAAATGCCGACTTCACTGGTAATCCACACGTCAAAAAACACAACTTACTTTTACAGACACAATGCTacagtaacatttaaatattcattactCTTTAAGTCAAGTTAATGAATGGtgcccaaaataataataataataataaaacaaagaaacaaacaaaaaaaaacaaaaagcaataattCACCTTTCCAGTCAttccctttttgtatttttgttgttgttgtttattaatagtatataatatgttaaaataaatagctcATGAAAGaagcaaccaaaacaaatgaGGCCAGCAGCATAAAGAGTCTGTCTGTGGAACTTGGCACTAATTGGAAAAATGGAGCAACCCTTCTGTTTGAACTATTCTGACCTTTTCAGCATCTGAACTATATCTGCCTTGTCTTATAAGACATATTTGGCATTTCTAACTCCCTTGCTTTGTGTGCTTCTAGCATCCTGAAACATGacttaaaacacataaaaacacctgttctatgtttttttaaccttttttatttttattttttcagctgtgGTCCTTCTGGTAATAAAGTCAGCCATatatcaaaacattattttgaccATTATCGACAAAATGACTCATCTTTGTTCCGAGATTTTGTAGGAATTTTTATTGGAAATCCATGTATATCATATGTATCAGtaacatttaatgcatttctttcaagCGGAAGCGCATCAAACTAGACCTAGAACAGCAAAGGTGACGTTTTATCAAAGTCAAACTACTTTGCCCATGGGGAATCTCTATCCCCCTCAACAAATCCGTTCCCATAAACTGTGCAGTTATTTGAAGGTAGGCCCTTCTCCTTATAGTACTGTATGGCAGATATGTAGGGGTTTATGAGATATGTTCAAAGGTGGAAGCTTGAGGTTGAAATCACCTTCATTTTCAAACAAGAGATATTTTAATTCATGCCTTTGAAAAGAAACAGCTTGTTAACATTTCCTTCCCAGCTAAGCCTTCGCCAGTTACCTTTAGGACAAAACTGCTTGTGGTCGATGTCAGACTTTCCCTAATTCCACAACGTTCCTTTTTATGCTGCCAGCCTTGTTACGTTGAACACgaaatgggttttattttttacagttcaaCAAAAtcgaaaaaaacacaaaattctctatatttacagtgaggaaaaaaaatgaaggggtggcaaacagtttgtgtttttttgtttttgttttgcctgtctgtttgtttctctctctctgagaatCGTCCCAATGGCAAACGAGAATAGAAATCAAACTGAAAAGGAAACCGAAAAAACGTAATAATCCAATCAGATCAACTAAAATTGCACAGTCTCAAAGAAGTTTGGAGAATGGAATGGAGATATAAAATCCAAACAGGGTTGATGAACATAGAAGGGAGGAAAAAGGTCAATAGTTCATGGAGGGTGAAAGTTCAAAAGTTCAGAAGACAGTTGAAAAGATGTCTGCCCCAGCCGGCGTTATAAGCTcctcacacattttttttttatagtttaaaaaaaaaaattgtttgaaaatgagatattttttttccatcgAAATAAAATGGAGAGACTCTGAGTGAAGAGTGACAGGTGCCCCCAACACTATGGCACACAATCAATGATGTCCTGGAAGGTTGAAGAGATGAAAGAGAATTAGGAAAAGCAGTCTAAGAGAGGTAGCCAGCCTTTTTACTTTGTTAATCCAAgtctgcttttgcttttcttttttttttgataatgCTGAGGCGTCATGATTTAACATCATGTGATGAAGGAACATGCTGGCCTCATGAGTGCATCCGATGAATGTCCAACATACAAGAAAACTCAAAGAAGTCTGGAatggtattgtttttgtttggcacTCGGGAGAAACAGGAAGGATAGTGGCGGGTAGTGGGGAGCTGGGGGGGAAGTGGGGGCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56573 lncRNA upstream 7961 36719652 ~ 36719989 (+) True G45403
TU56567 lncRNA upstream 23057 36704652 ~ 36704893 (+) True G45397
TU56565 lncRNA upstream 27887 36698798 ~ 36700063 (+) True G45395
TU56546 lncRNA upstream 86831 36639642 ~ 36641119 (+) False AMCG00013571
TU56543 lncRNA upstream 114008 36613735 ~ 36613942 (+) True G45373
TU56578 lncRNA downstream 52613 36782569 ~ 36783620 (+) True G45408
TU56685 lncRNA downstream 334001 37063957 ~ 37064264 (+) True G45499
TU56746 lncRNA downstream 521245 37251201 ~ 37290765 (+) True G45538
TU56957 lncRNA downstream 1079935 37809891 ~ 37816573 (+) True AMCG00013616
TU56959 lncRNA downstream 1088415 37818371 ~ 37821575 (+) True AMCG00013618
AMCG00013570 mRNA upstream 14981 36709375 ~ 36712969 (+) True AMCG00013570
AMCG00013573 mRNA upstream 34809 36692152 ~ 36693141 (+) True AMCG00013573
AMCG00013571 mRNA upstream 81884 36620402 ~ 36646066 (+) True AMCG00013571
AMCG00013567 mRNA upstream 251558 36462852 ~ 36476392 (+) True AMCG00013567
AMCG00013568 mRNA upstream 283220 36434886 ~ 36444730 (+) True AMCG00013568
AMCG00013574 mRNA downstream 64085 36794041 ~ 36797976 (+) True AMCG00013574
AMCG00013576 mRNA downstream 76802 36806758 ~ 36810451 (+) True AMCG00013576
AMCG00013575 mRNA downstream 113572 36843528 ~ 36860797 (+) True AMCG00013575
AMCG00013583 mRNA downstream 247316 36977272 ~ 37013396 (+) True AMCG00013583
AMCG00013582 mRNA downstream 288495 37018451 ~ 37034474 (+) True AMCG00013582
TU56545 other upstream 89802 36630977 ~ 36638148 (+) False AMCG00013571
TU56506 other upstream 324049 36403354 ~ 36403901 (+) True G45338
TU56494 other upstream 357863 36338262 ~ 36370087 (+) True AMCG00013566
TU56332 other upstream 1068117 35655302 ~ 35659833 (+) True G45209
TU56293 other upstream 1389898 35334890 ~ 35338052 (+) True G45174
TU56576 other downstream 6721 36736677 ~ 36738479 (+) True G45406
TU56611 other downstream 144951 36874907 ~ 36877603 (+) True G45439
TU56708 other downstream 383546 37113502 ~ 37120571 (+) False AMCG00013587
TU56759 other downstream 585530 37315486 ~ 37320331 (+) False AMCG00013595
TU57084 other downstream 1324948 38054904 ~ 38058834 (+) False AMCG00013629

Expression Profile