RNA id: TU56996


Basic Information

Item Value
RNA id TU56996
length 669
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G45737
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37876383 ~ 37932198 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttttacacacacacatacgcccTCTGAGCATATACACCCGTGAGGCTGTGACTTCAAAGCAgacttgtttattttcagtctatAATGGATACAAGATTTAAAATGCCAACACATTATgacaaaatgaaaccacaaacGGATAAAACAAGAACgagggaaagaaaatgttgacaATTTGTCAATCTTCAGGTTTAAGTTTGAGAGATGTCACAATtcttaaaaagcaacaacaaaaaaactgcctTTATCTTTCAGGATGTGTGGGTGTTATACTTATGTGGAATTGTTCCTTGGTTTGTGTACTGTAGAATCTGATACTGTGTTGTGCGAATTGTCTTGCACTGCTACGCCTTTTCAtagttgttttttagttttctacACAGAAGTACAAACCACAAGGCTTTGGTTGTTAAGAGACCCAGTGTAGCTGATCAAATGTGTTGCTGTACAGGATGTGTGTTAATTTTTGATCTTGTTCATACCGACAGTCCTGAGTGGATGTGGGTCACATCATCTGAGATGCAAATAATTTAGGCTATTGCACTGTTCGAAGACTAGGTATATGCGAaagatttaaattgaaagtaaaataattatcatGAAAATCAAGACATACActtttgagagagaaaaaaactttaaatgctatgtttttttttgtttttgaa

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56959 lncRNA upstream 54808 37818371 ~ 37821575 (+) True AMCG00013618
TU56957 lncRNA upstream 59810 37809891 ~ 37816573 (+) True AMCG00013616
TU56746 lncRNA upstream 585618 37251201 ~ 37290765 (+) True G45538
TU56685 lncRNA upstream 812119 37063957 ~ 37064264 (+) True G45499
TU56578 lncRNA upstream 1092763 36782569 ~ 36783620 (+) True G45408
TU57092 lncRNA downstream 141057 38073255 ~ 38073852 (+) True G45805
TU57100 lncRNA downstream 165792 38097990 ~ 38098531 (+) True G45812
TU57153 lncRNA downstream 278892 38211090 ~ 38212886 (+) True G45854
TU57159 lncRNA downstream 306341 38238539 ~ 38243152 (+) True G45860
TU57162 lncRNA downstream 313758 38245956 ~ 38246418 (+) True G45862
AMCG00013613 mRNA upstream 296 37872834 ~ 37876087 (+) True AMCG00013613
AMCG00013615 mRNA upstream 9349 37860389 ~ 37867034 (+) True AMCG00013615
AMCG00013614 mRNA upstream 23454 37845433 ~ 37852929 (+) True AMCG00013614
AMCG00013618 mRNA upstream 57537 37818580 ~ 37818846 (+) False AMCG00013618
AMCG00013616 mRNA upstream 58619 37805207 ~ 37817764 (+) False AMCG00013616
AMCG00013619 mRNA downstream 19974 37952172 ~ 37959732 (+) True AMCG00013619
AMCG00013620 mRNA downstream 28265 37960463 ~ 37964226 (+) True AMCG00013620
AMCG00013628 mRNA downstream 34452 37966650 ~ 37979137 (+) True AMCG00013628
AMCG00013627 mRNA downstream 66382 37998580 ~ 38011180 (+) True AMCG00013627
AMCG00013626 mRNA downstream 100411 38032609 ~ 38044550 (+) True AMCG00013626
TU56759 other upstream 556052 37315486 ~ 37320331 (+) False AMCG00013595
TU56708 other upstream 755812 37113502 ~ 37120571 (+) False AMCG00013587
TU56611 other upstream 998780 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 1137904 36736677 ~ 36738479 (+) True G45406
TU56545 other upstream 1238235 36630977 ~ 36638148 (+) False AMCG00013571
TU57084 other downstream 122706 38054904 ~ 38058834 (+) False AMCG00013629
TU57149 other downstream 298368 38230566 ~ 38231330 (+) True G45850
TU57196 other downstream 438458 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 632300 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 887211 38819409 ~ 38821953 (+) False AMCG00013681

Expression Profile