RNA id: TU57149


Basic Information

Item Value
RNA id TU57149
length 608
RNA type TUCP
GC content 0.50
exon number 2
gene id G45850
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38230566 ~ 38231330 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACGTGGCATTCCATCTGAACCCACGCATACGGGAGGGTATGGTGGTGAGGAACAGCTACATGGGGGGGTGCTGGGGGAATGAGGAGAGCAACCTGGACTGCAACCCCTTCCAAGAGGGACAGTACTTTGAGatctcAGTGCGCTGCGGTAACTGGCGCTACAAGGTGTTTGTGAATGGTCAGCGTCTCTGTGAATTCGCCCACCGTCTGCAGCCCTTCACACAGGTGGACACTCTGCAGGTGGAGGGAGACGTGCAGCTCTCCTACATCCACTACTGACCCCGACACTCCTCCCCTCATCCACCAGTCTCCCATCCGTCTGTATTCCCTCAGCCctttcacactctctctctctctctgtcttcacAAGAGATGCAGAGGGACAGCCAATGAAAATCCCCCACACAGTAGCCAACCTCTCCCTCCTATTCCCACACACACTGTGAGGAGAGGGCTGcactgagatgggagaaaccctcgtttatatagtgccttagcAACACCTGCCCCCCTAATCAAAACCTGttagttaaatataataatttaatattttaatacatttatggacaattgaataaataatctttaattaCATCTGTCTCTTTATT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57153 lncRNA upstream 17680 38211090 ~ 38212886 (+) True G45854
TU57100 lncRNA upstream 132035 38097990 ~ 38098531 (+) True G45812
TU57092 lncRNA upstream 156714 38073255 ~ 38073852 (+) True G45805
TU56996 lncRNA upstream 298368 37876383 ~ 37932198 (+) True G45737
TU56959 lncRNA upstream 408991 37818371 ~ 37821575 (+) True AMCG00013618
TU57159 lncRNA downstream 7209 38238539 ~ 38243152 (+) True G45860
TU57162 lncRNA downstream 14626 38245956 ~ 38246418 (+) True G45862
TU57163 lncRNA downstream 18697 38250027 ~ 38252663 (+) True G45863
TU57165 lncRNA downstream 122584 38353914 ~ 38354711 (+) True G45865
TU57257 lncRNA downstream 186235 38417565 ~ 38474315 (+) True G45941
AMCG00013638 mRNA upstream 36236 38188374 ~ 38194330 (+) True AMCG00013638
AMCG00013631 mRNA upstream 108762 38118324 ~ 38121804 (+) True AMCG00013631
AMCG00013630 mRNA upstream 142755 38077005 ~ 38087811 (+) True AMCG00013630
AMCG00013629 mRNA upstream 160921 38054897 ~ 38069645 (+) True AMCG00013629
AMCG00013625 mRNA upstream 177005 38051221 ~ 38053561 (+) True AMCG00013625
AMCG00013640 mRNA downstream 114487 38345817 ~ 38353162 (+) True AMCG00013640
AMCG00013646 mRNA downstream 151139 38382469 ~ 38398767 (+) True AMCG00013646
AMCG00013647 mRNA downstream 220459 38451789 ~ 38458783 (+) True AMCG00013647
AMCG00013648 mRNA downstream 236202 38467532 ~ 38468896 (+) True AMCG00013648
AMCG00013649 mRNA downstream 245637 38476967 ~ 38478698 (+) True AMCG00013649
TU57084 other upstream 171732 38054904 ~ 38058834 (+) False AMCG00013629
TU56759 other upstream 910235 37315486 ~ 37320331 (+) False AMCG00013595
TU56708 other upstream 1109995 37113502 ~ 37120571 (+) False AMCG00013587
TU56611 other upstream 1352963 36874907 ~ 36877603 (+) True G45439
TU56576 other upstream 1492087 36736677 ~ 36738479 (+) True G45406
TU57196 other downstream 139326 38370656 ~ 38373198 (+) True G45894
TU57357 other downstream 333168 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 588079 38819409 ~ 38821953 (+) False AMCG00013681
TU57658 other downstream 1330643 39561973 ~ 39562300 (+) True G46244
TU57778 other downstream 2119322 40350652 ~ 40373160 (+) False G46345

Expression Profile