RNA id: TU57196



Basic Information


Item Value
RNA id TU57196
length 484
RNA type TUCP
GC content 0.59
exon number 2
gene id G45894
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38370656 ~ 38373198 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGGCAGTGAGTGGAAAGGACAGATCAATGGTTGTGGTGAGGGTGTCAATGACCTCTTATCCTCGCGGTGCTCATAGTAGCCATGGCCGCGGCCCTCATCGTAGGGGCGCTTGCGACTGTGGTGGTGTGAGTGACGCTCTTCCTCCTCTGCTTTGGGCTGGACGGGCTGTGCCTCCTCCTGGGCCGGGTCAGAGCCGGAATCCTGCTCCTGTTCCTCTTGCTTCACCTCTGCCTCCTCTGTCTTCACCTCTGGTGCGGGGGGGTCCGGACCTGGCTTGTCCTCATCAGCAGGCTCCTCCTCCTGGGCCTCGCTCTCCTCCTTCAGGTCTGGTTCCTTAACTCCCTCGTCATTCACTCCATCCTCAGACAACTGGCTTAAGTCCTTCTCGGGGATATTCTCTTGTTCCATTACATTATATGcatctccccctccctctccatccAGTGCTCCGTCCTCCAGctgctctgcctcctcctcctcttcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU57165 lncRNA upstream 15945 38353914 ~ 38354711 (+) True G45865
TU57163 lncRNA upstream 117993 38250027 ~ 38252663 (+) True G45863
TU57162 lncRNA upstream 124238 38245956 ~ 38246418 (+) True G45862
TU57159 lncRNA upstream 127504 38238539 ~ 38243152 (+) True G45860
TU57153 lncRNA upstream 157770 38211090 ~ 38212886 (+) True G45854
TU57257 lncRNA downstream 44367 38417565 ~ 38474315 (+) True G45941
TU57270 lncRNA downstream 96856 38470054 ~ 38472706 (+) True G45951
TU57326 lncRNA downstream 151514 38524712 ~ 38525412 (+) True G45990
TU57335 lncRNA downstream 163330 38536528 ~ 38537058 (+) True G45999
TU57358 lncRNA downstream 193451 38566649 ~ 38567319 (+) True G46016
AMCG00013640 mRNA upstream 17494 38345817 ~ 38353162 (+) True AMCG00013640
AMCG00013638 mRNA upstream 176326 38188374 ~ 38194330 (+) True AMCG00013638
AMCG00013631 mRNA upstream 248852 38118324 ~ 38121804 (+) True AMCG00013631
AMCG00013630 mRNA upstream 282845 38077005 ~ 38087811 (+) True AMCG00013630
AMCG00013629 mRNA upstream 301011 38054897 ~ 38069645 (+) True AMCG00013629
AMCG00013646 mRNA downstream 9271 38382469 ~ 38398767 (+) True AMCG00013646
AMCG00013647 mRNA downstream 78591 38451789 ~ 38458783 (+) True AMCG00013647
AMCG00013648 mRNA downstream 94334 38467532 ~ 38468896 (+) True AMCG00013648
AMCG00013649 mRNA downstream 103769 38476967 ~ 38478698 (+) True AMCG00013649
AMCG00013655 mRNA downstream 173130 38546328 ~ 38550955 (+) True AMCG00013655
TU57149 other upstream 139326 38230566 ~ 38231330 (+) True G45850
TU57084 other upstream 311822 38054904 ~ 38058834 (+) False AMCG00013629
TU56759 other upstream 1050325 37315486 ~ 37320331 (+) False AMCG00013595
TU56708 other upstream 1250085 37113502 ~ 37120571 (+) False AMCG00013587
TU56611 other upstream 1493053 36874907 ~ 36877603 (+) True G45439
TU57357 other downstream 191300 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 446211 38819409 ~ 38821953 (+) False AMCG00013681
TU57658 other downstream 1188775 39561973 ~ 39562300 (+) True G46244
TU57778 other downstream 1977454 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 4054903 42428101 ~ 42441245 (+) False AMCG00013770

Expression Profile