RNA id: TU57270


Basic Information

Item Value
RNA id TU57270
length 1574
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G45951
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38470054 ~ 38472706 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAAATCTTTTATTTAACCTAGATTAACACCTGTCTCTCCCAGTGACCTCTGTGCGTCTGTGCTGCCGACTCCAGAAGCATGACAGTGGAGGAAATATGCCCTCTAGTGGCCAGTCTTGCAAACTACAcacaatactgcactgcacagcacagtcaACTATGGCAGAGTACAGCACAGGCCATTCAActatacagtacacacacacacacacacacagaacggcagatacacagacagatacacagacagaggtCACATCTTGTCACCATCTCCTGAACACCAAGtctatgatttaattaaaaaaaaaaaagttacatataACTtctatatttccttttttccatgttttatttaagatatCATCCTTTAAAATACCCCCctcagaaaaactaaatcatacAGCCCCCTCGTCCTCCACtcattttgcactttgtgtttGAGGTCACTGGACCAGACAGCGCAGTACTGTAGTGTCTCCCTGCCATGCTGTACCGGACCGTACTGCAGCTCTGCAGGACTCGGAGCGCGTTTTAATGGTGTACAGACCACTAGTGTAGTGATTACAGCCTCCGTCAGTCCCCCGTTCCCCAGGGTTTAAATATAAGGCATTTcaatacagacaaacacaagcaGACAGAGTCACACCCttcaaaaaactaaagaaagagCATTTACAACTCCATCTCCCAACCTGACCTATTGTGATCCAATCAGGTTACGATCGGTCGAGCGAGATTCTAATCCGGTTATGGGCTTACCTATTGATCAACATTGCATTGATGATGTAATTTGTCCAACTAGAGACCCCTGAGAGTCAGAGCGCACAGGAAGTTTACATTGTTCACTGGGAAAGACCCCTGGAAATCCATCATTAGAAACACACCTAATTCAAGTGAACTGAACTCCTGTcctatatacagtgtgtgtgagagtatctGTCTGttatgtgtgagagtgtgagtacAAATCTGcatgtatatttgttattgCCTGGGTGTGTGCTATCGCTGTGCGTGTTCAACTACGCATGCCCTGCTGAACACACATGTAACCGTTGTCCATCTGTCAGGCTGTGACACGCATGTTGTcctgcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtgtgtctgtcccctTCACCCTAACTACTCCACTACTCTCCCAtccctgcctttcctctctccttctctctctctcccccctttgACCACCTTTCCTCTACTTCCTCATACTGCCCCAGAGGGTAGTGCTCCCGGTAAGAGTGCAGGTGTCTCCACAGCGACTCCTGCTGCTTCTGCAGGGCGGGGGGCATGTCTTGATACACGTCTGTGAACAGCAGGGCGGGGCTGGGCTTCTTGCGCCGCTCTGCCTTCTCAAAGGCCTCCATGACGCGCCGGCGGGACTGCTTCCTCCAGGCGCGTTCGTCCTCCTCGCCCCACCAGCCGCGCGCCGCCATGTAGTGCCGCAGCCGCGAGATGGGGTGGTCCTGCTTGTCCCAGTAGTTGACCTCGTCTACCGAGCGGTAGGCCGAGCTGTCGTCACTCGTGCTGTGGTGGCCGATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57165 lncRNA upstream 115343 38353914 ~ 38354711 (+) True G45865
TU57163 lncRNA upstream 217391 38250027 ~ 38252663 (+) True G45863
TU57162 lncRNA upstream 223636 38245956 ~ 38246418 (+) True G45862
TU57159 lncRNA upstream 226902 38238539 ~ 38243152 (+) True G45860
TU57153 lncRNA upstream 257168 38211090 ~ 38212886 (+) True G45854
TU57326 lncRNA downstream 52006 38524712 ~ 38525412 (+) True G45990
TU57335 lncRNA downstream 63822 38536528 ~ 38537058 (+) True G45999
TU57358 lncRNA downstream 93943 38566649 ~ 38567319 (+) True G46016
TU57380 lncRNA downstream 116173 38588879 ~ 38590159 (+) True G46034
TU57381 lncRNA downstream 118049 38590755 ~ 38621343 (+) True G46035
AMCG00013648 mRNA upstream 1158 38467532 ~ 38468896 (+) True AMCG00013648
AMCG00013647 mRNA upstream 11271 38451789 ~ 38458783 (+) True AMCG00013647
AMCG00013646 mRNA upstream 71287 38382469 ~ 38398767 (+) True AMCG00013646
AMCG00013640 mRNA upstream 116892 38345817 ~ 38353162 (+) True AMCG00013640
AMCG00013638 mRNA upstream 275724 38188374 ~ 38194330 (+) True AMCG00013638
AMCG00013649 mRNA downstream 4261 38476967 ~ 38478698 (+) True AMCG00013649
AMCG00013655 mRNA downstream 73622 38546328 ~ 38550955 (+) True AMCG00013655
AMCG00013654 mRNA downstream 91783 38564489 ~ 38566281 (+) True AMCG00013654
AMCG00013656 mRNA downstream 105557 38578263 ~ 38580971 (+) True AMCG00013656
AMCG00013671 mRNA downstream 135344 38608050 ~ 38612189 (+) True AMCG00013671
TU57196 other upstream 96856 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 238724 38230566 ~ 38231330 (+) True G45850
TU57084 other upstream 411220 38054904 ~ 38058834 (+) False AMCG00013629
TU56759 other upstream 1149723 37315486 ~ 37320331 (+) False AMCG00013595
TU56708 other upstream 1349483 37113502 ~ 37120571 (+) False AMCG00013587
TU57357 other downstream 91792 38564498 ~ 38564994 (+) False AMCG00013654
TU57427 other downstream 346703 38819409 ~ 38821953 (+) False AMCG00013681
TU57658 other downstream 1089267 39561973 ~ 39562300 (+) True G46244
TU57778 other downstream 1877946 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 3955395 42428101 ~ 42441245 (+) False AMCG00013770

Expression Profile