RNA id: TU57381


Basic Information

Item Value
RNA id TU57381
length 1693
lncRNA type sense_over
GC content 0.46
exon number 5
gene id G46035
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38590755 ~ 38621343 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTAAGTAATATGAACCTTCACGCCCATGCTGCAGACAGCGGGACCCACAGGGACGCAGCACAGTTAACAcaagtgataataataaatacagccGCCGCGCACACTTCCTGTGTTTTGTCAAGCGCTGCTACACCACAGCCTCGCCAGCCCACTGGACTGTACCACCGCgctggggggggggaaaggggGAGTCAAACgcagatatttaaatatgcagcTGTACTCAGGGCGATAGACTACAGGGTCCTCGCTGTGCTGTAATAATTCAATACGTTAGTGTTGTTCTCGTCGTTTGATTTCGGGCAGGAAGGAAGATTATCTTGAGACAGGCTACATTGCAGACGGGAGTCGGCGTGTGACGTCACGGCTGCGCAGACGGAAGTCCGGCCTTTCGCAGAATGAATGCAATCGAGGTTCCGTCCGTGCTGCCCCGGCTTCATGCACTACAGTCCGCGGCTGCTCCAGCGCAGTCCCTCTTGAGAAGCTGCGCAGCTGTGCGCATTTGTGGCCTGTGGATGCGTGACCTGGTGACGTCTTTTGCGCAGACGGCTAACTTGGACAGGTTTGTCGCAGAGTCTGCGCACTTCACCTCCCACACCACCCGACTCCCCTGCCTCCCGACGTACGCATGCGCGGTATGTGCAGACAACAAACGCAGCAACTCAACAGTGGTAGCTGCGCTCGCCCAGCAAAGTCCTCGGCCTGTTCCAGCAGTGCCTCCTTGATCGCCCCTTCCCCAGCCAGCAGCACCGTCCGCTGACCCCCCAGAAGCACACACAGAGTCGAAGCGTAAGGACAGGCAAGGCAGGCAACTGCCTGGGGCCGACAAGACTCTAGGGGGCCACCAAGGGGCAACCAAGTCGAATCTGCAGCATTGTCAGCAACGTCTAAAGAAAAATCCCTGGATTCCCCGCCCCCTCCTAACTACTGTTGTGCAACGACCTCATCTCTCAAACCTCCCTAAAGGGGCCTCATGATTGTCGTGTGAGTTTGTTTTGAAGCAAACACATGTAACTGCAATGAAGAGGTCCTGTCTCTCCGGtagcaaaaaagaaagaaaaaaaagaggacgtattaaaaagaaaacatgacagTGGAGCATTATTCAAGTTCCTGTCAAGAATAGCAAAAACAGAAGTCCATCCGCCTGTTGATGATGAGGAAGAGGACACAATACAAATTACCTCTACATGCACTACTAGCAGCAGCTAGTTGTTTactgtctatttttgaaatttGTTATGCATGTATACTTTTTGAAAAGACCAAGAGCACTAAATGTGTATATAGATGTTATAGTTATTTACAATTATGTTATTCTCCCATTTGTATTATGTCAGGTCTTCTTAGTGTTATTACATTTGCTTTAAGTTTTTTTCAGCtagttatttacaattattttattgtcctgtttttgtctgctatgttaacatgttttaatttttttattttaatgttaaccaatgtgaaaataaaactgtactgtactctgatgttttttgacatttgattatttaaaggGGGTTTCGGGAATATAATGGTAATGAACATTAGTTAAAAGGGTTATGGAAACAAATATGGGATTTTTTGCCTAGGGCCCCTTCAGACTCTAGAATCGCCTCTGCACCTCCTCCATGAAAATACCTGTaacttttacttaaaaaaataaaaataaaaattgcagCTTCAAAG

Function

GO:

id name namespace
GO:0030031 cell projection assembly biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57380 lncRNA upstream 596 38588879 ~ 38590159 (+) True G46034
TU57358 lncRNA upstream 23436 38566649 ~ 38567319 (+) True G46016
TU57335 lncRNA upstream 53697 38536528 ~ 38537058 (+) True G45999
TU57326 lncRNA upstream 65343 38524712 ~ 38525412 (+) True G45990
TU57257 lncRNA upstream 116440 38417565 ~ 38474315 (+) True G45941
TU57394 lncRNA downstream 23935 38645278 ~ 38673471 (+) False AMCG00013665
TU57375 lncRNA downstream 35253 38656596 ~ 38699232 (+) False AMCG00013672
TU57522 lncRNA downstream 313120 38934463 ~ 38939511 (+) True G46138
TU57779 lncRNA downstream 1745123 40366466 ~ 40373800 (+) True G46345
TU57790 lncRNA downstream 1764691 40386034 ~ 40389941 (+) True AMCG00013729
AMCG00013656 mRNA upstream 9784 38578263 ~ 38580971 (+) True AMCG00013656
AMCG00013654 mRNA upstream 24474 38564489 ~ 38566281 (+) True AMCG00013654
AMCG00013655 mRNA upstream 39800 38546328 ~ 38550955 (+) True AMCG00013655
AMCG00013649 mRNA upstream 112057 38476967 ~ 38478698 (+) True AMCG00013649
AMCG00013648 mRNA upstream 121859 38467532 ~ 38468896 (+) True AMCG00013648
AMCG00013665 mRNA downstream 30591 38651934 ~ 38672626 (+) True AMCG00013665
AMCG00013664 mRNA downstream 61656 38682999 ~ 38687808 (+) True AMCG00013664
AMCG00013672 mRNA downstream 76037 38697380 ~ 38707354 (+) True AMCG00013672
AMCG00013678 mRNA downstream 88632 38709975 ~ 38722908 (+) True AMCG00013678
AMCG00013673 mRNA downstream 116891 38738234 ~ 38741039 (+) True AMCG00013673
TU57357 other upstream 25761 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 217557 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 359425 38230566 ~ 38231330 (+) True G45850
TU57084 other upstream 531921 38054904 ~ 38058834 (+) False AMCG00013629
TU56759 other upstream 1270424 37315486 ~ 37320331 (+) False AMCG00013595
TU57427 other downstream 198066 38819409 ~ 38821953 (+) False AMCG00013681
TU57658 other downstream 940630 39561973 ~ 39562300 (+) True G46244
TU57778 other downstream 1729309 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 3806758 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 3806758 42428101 ~ 42441245 (+) False AMCG00013770

Expression Profile