RNA id: TU57658



Basic Information


Item Value
RNA id TU57658
length 328
RNA type TUCP
GC content 0.57
exon number 1
gene id G46244
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 39561973 ~ 39562300 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ccccactcttccaccaacgcacttgcaagttcccggacatttctgggagAATGGCCCTGGCCCtagccctagccctcaccctccgagccaacaggtcccagacgtgctcagtgggattgagatccgggctctttgctggccatggcagaacacttaTATTCCTGTATTGcgggaaatcacgtccagcgaaggtgggtttgtgcccagaggcgacgttgttgccggtgatgtctggtaaggacctgccttacaacaggcctacaagccctcagtccagcctctctcagcctattgcgcacagtctgagcactgatggagggattgtgca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU57522 lncRNA upstream 622462 38934463 ~ 38939511 (+) True G46138
TU57375 lncRNA upstream 862741 38656596 ~ 38699232 (+) False AMCG00013672
TU57394 lncRNA upstream 888502 38645278 ~ 38673471 (+) False AMCG00013665
TU57381 lncRNA upstream 940630 38590755 ~ 38621343 (+) True G46035
TU57380 lncRNA upstream 971814 38588879 ~ 38590159 (+) True G46034
TU57779 lncRNA downstream 804166 40366466 ~ 40373800 (+) True G46345
TU57790 lncRNA downstream 823734 40386034 ~ 40389941 (+) True AMCG00013729
TU57791 lncRNA downstream 829588 40391888 ~ 40412672 (+) True G46355
TU57796 lncRNA downstream 854332 40416632 ~ 40425507 (+) True G46360
TU57909 lncRNA downstream 1320549 40882849 ~ 40885629 (+) True G46455
AMCG00013705 mRNA upstream 1160 39553959 ~ 39560813 (+) True AMCG00013705
AMCG00013708 mRNA upstream 21381 39529274 ~ 39540592 (+) True AMCG00013708
AMCG00013702 mRNA upstream 155280 39346890 ~ 39406693 (+) True AMCG00013702
AMCG00013704 mRNA upstream 282382 39278797 ~ 39279591 (+) True AMCG00013704
AMCG00013693 mRNA upstream 328916 39227382 ~ 39233057 (+) True AMCG00013693
AMCG00013707 mRNA downstream 40801 39603101 ~ 39627214 (+) True AMCG00013707
AMCG00013706 mRNA downstream 70891 39633191 ~ 39640768 (+) True AMCG00013706
AMCG00013711 mRNA downstream 154667 39716967 ~ 39732114 (+) True AMCG00013711
AMCG00013712 mRNA downstream 175427 39737727 ~ 39745523 (+) True AMCG00013712
AMCG00013719 mRNA downstream 191434 39753734 ~ 39754705 (+) True AMCG00013719
TU57427 other upstream 740020 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 996979 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 1188775 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 1330643 38230566 ~ 38231330 (+) True G45850
TU57084 other upstream 1503139 38054904 ~ 38058834 (+) False AMCG00013629
TU57778 other downstream 788352 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 2865801 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 2865801 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 2865801 42428101 ~ 42441245 (+) False AMCG00013770
TU58242 other downstream 3082687 42644987 ~ 42648754 (+) True G46723

Expression Profile