RNA id: TU57778


Basic Information

Item Value
RNA id TU57778
length 2249
RNA type TUCP
GC content 0.42
exon number 3
gene id G46345
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 40350652 ~ 40373800 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGGGGCTCCGGCCGCGCCGCGGAGAGGCGATAGTGATGCAGGAAGATTGGAAATCACGGAAAGCGAGGGACAGGGGCGACGCAGGTGACAGTCCGGCTGCACAGGCTGACCAGGAGCCGCAACCAGCCCAGACACTCGCACGAAGCTCCTTCCTGGGCTGATggagCTGTcgaaactgaaaacaacagcgTCATCGCAATATGGtgtccAGGGAGTTTGGGACTGCAAACAGAGAGCCTATTAACCTGTTGCCAGCGCCTGCCTGTGGAATCAGTCCTAAGAAGCTTGTGAAACAATGTGTGCAAACTGAATGGAAAAGGACTCTTAGTCTTCTTCTGGAAGCTGGTTTCAGGTGGTGGCTTAGAGTGcttcatatttttaatctaGCACCATTTGAAATCAGTGTTCTTGGAGCAAGAGAGACGTCACCAGTCTGCCTGAAGAGACAAGCCCTGCTTTCACCCACACAGAGCTGCCCGCAGGGaggaaacaaacacttttttccaatggACTCCACAGACGTGGGCAGGCTTTTTAATCACAGAGGttatgcagtgttttgttttgattcccTTGTTAATttgcaatgaaaaaatacagatagatttattattttattcctttcatatataaaaatgtaacagaGATTATATACAATCCCCCCAAAGACAATTAATGGTaatgtatatagtgtgtatatattatatatacacacagtacctttcaaaatgttcaccatTTGTTGcattatagcctggaattaaaatgcattaaaatacttaatgtgTATtaatctacacatcctacccacATCTttcaagtaaaatatatattgaaatatgtagAAAACGTATTGCAACTAAAAACTGAACTTTCTTGGTTTGGATAAGTGTTCATCcccctaaattagctcaggtgtaagcaatcaccttcaaaataacCACTAAATTAAGTGGTCTTCAcctgtgttaaaatgtaatgattcacatgatttcagagtaaattcagcagttcctgtaggttccttctgctgggtagtgcattcaatGCAAAGACTCAAcaatgagcaccaaggagctttcaaaataactttCAAGATAAAGTTGGTGAAATGCACAGATATGGGgatgtgtataaaaaatatcaaaggccttgaatatcccttggagcatggtCAAGACGATTATTAAGTGGAAGGtgtgtggcaccaccaagaccctgcctagatcagactACCTCCAAACTGGATGTCCAAGCAAGAAGGAAattgatcagagaggctaccaagaggcaactttgcaagagctacacaGGCTTTTTTGTACAAGACTGGTCAAAGCATGCATGGTGCAActatatcccaagcactccacaaatctggcctgtatggtagggtggcaTAAAGGAAGTAATTACTCTAGAAAGCCCACCAAAACACTTGGGAGTTTCTGTAGTCATGTGGCAAAACagaaattgaactttttggcctaaatgcaaagcgttatgtttggtgaaacccaacacagcacaccaCCCAAAGAttaccatccctactgtgaagcatggtgatgGCAGCAATTTTACATTATGGGGATGTTcctcattggcagggactgtgGAACTCGTCATGATagaaggaaaatgaatggagtaAAGTATAGAGGAAAACCTGCAAAGgtgaaactgggacagaaggTCACCTTTCAGCAtaacaatgacccgaagcacacagccaaaaccaCACTGGAGTAGTTAAGGAACAagaaggtaaatgtccttgagtagcccagtcagagccccaacTCCAACGAGATGAGTGGCATAACTTGAAGATTGTtgtccatcaacactccccaaggaacagtttgaacagttttgtaaaggaTGGTCAGATATTGCCAATATTGCCAGTTTGCAAAGTTGGTAGATACCTATctcaacagactcacagctgtaattgctgccaaaggtgcagatcaggggggtggagacttatccagttatgatatttcagttttgtatttttaatatatttttcttccacaataaaaacttttttccccttaacagtgtggagtatggtgtgtagataaatggAAAAATTCCTAATTTAAATGGATGAATCTTTGAGGCACTACCAACAAAATCTAAAAAGGGGGGTATAGACTTTGTGCAAGTACTGTATTTACACAATCTGGCAATTAAAATGATGGGAGTCACCCTAAAGAGTATGAAAATACAACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57522 lncRNA upstream 1411141 38934463 ~ 38939511 (+) True G46138
TU57375 lncRNA upstream 1651420 38656596 ~ 38699232 (+) False AMCG00013672
TU57394 lncRNA upstream 1677181 38645278 ~ 38673471 (+) False AMCG00013665
TU57381 lncRNA upstream 1729309 38590755 ~ 38621343 (+) True G46035
TU57380 lncRNA upstream 1760493 38588879 ~ 38590159 (+) True G46034
TU57790 lncRNA downstream 12874 40386034 ~ 40389941 (+) True AMCG00013729
TU57791 lncRNA downstream 18728 40391888 ~ 40412672 (+) True G46355
TU57796 lncRNA downstream 43472 40416632 ~ 40425507 (+) True G46360
TU57909 lncRNA downstream 509689 40882849 ~ 40885629 (+) True G46455
TU57981 lncRNA downstream 829904 41203064 ~ 41204149 (+) True G46508
AMCG00013726 mRNA upstream 9334 40327898 ~ 40341318 (+) True AMCG00013726
AMCG00013727 mRNA upstream 79215 40183935 ~ 40271437 (+) True AMCG00013727
AMCG00013725 mRNA upstream 230527 40111794 ~ 40120125 (+) True AMCG00013725
AMCG00013720 mRNA upstream 453484 39789632 ~ 39897168 (+) True AMCG00013720
AMCG00013724 mRNA upstream 570462 39779219 ~ 39780190 (+) True AMCG00013724
AMCG00013729 mRNA downstream 4572 40377732 ~ 40388323 (+) False AMCG00013729
AMCG00013728 mRNA downstream 72489 40445649 ~ 40467813 (+) True AMCG00013728
AMCG00013734 mRNA downstream 101865 40475025 ~ 40478788 (+) True AMCG00013734
AMCG00013731 mRNA downstream 182517 40555677 ~ 40604675 (+) True AMCG00013731
AMCG00013735 mRNA downstream 237676 40610836 ~ 40622089 (+) True AMCG00013735
TU57658 other upstream 788352 39561973 ~ 39562300 (+) True G46244
TU57427 other upstream 1528699 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 1785658 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 1977454 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 2119322 38230566 ~ 38231330 (+) True G45850
TU58194 other downstream 2054941 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 2054941 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 2054941 42428101 ~ 42441245 (+) False AMCG00013770
TU58242 other downstream 2271827 42644987 ~ 42648754 (+) True G46723
TU58393 other downstream 2666824 43039984 ~ 43044436 (+) True G46840

Expression Profile