RNA id: TU57791


Basic Information

Item Value
RNA id TU57791
length 4141
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G46355
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 40391888 ~ 40412672 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAATCAACTGCTTTGAGCAACCATTCTGCTATGTCAAATCATATAATCTCTTGTAACTCAACTCAAAGAAATACCAGAGAACTTGCTTTGGAAACAATGCATTAGAACActtgacaagaaaaacaaaaagcaaactaaaGGTATTACATCACCTGCaaaaaaataaccttttaatattatttgaatcCCTTCACCTGTCAACATTAAGAGTCTTCTGGGCAATGTTTGTTTCATTCCCCAAGTATAATAACCATCTacaaatacagcaaaataaataaaggcatatTAGTAATCTTGGGCTACTCCTACAACTTTGGTGGACTAACAGTACCAATATCCAATTCATACCCATCCCCATTTCTTCAGACTATACCTAGGCCAGATTTCTCTTATGGCCAACGTAATCCACACTgtaaatgggaaaaaaacaaaaacgcctCAGATATTCAATCTGCCAGTGAGATTAGTCCACAAATCTAAATGGGAAACCTCAGCTTGTTCAATTTCAATTTAGCACACCCTCAGCTATACTTCCACCCTGCCACATCCAGGAAGCAGGAAAATGGCACATACCGAGATAAATCCCTTCCTTATTACTCCAGAATTGCTGCTTCAGGTTTACAAGGGACCAATGGGTTTTACATTAACTGTCTGGTTATCATTATCCCTATCATGACCTCCTACCACCACAGAGTGCTATAGTAGAATGTAGTCTGTGCTATTGGGCTGACTTGTTTCAGAACCCTGTTATTTCAAGGGAAATAGGTCACTACTAGAGCAAAAACTGGATATCCTGACATTAACATCTAGTCATTTGTATAATACAGAATACAAGTGAAGTTAAACAAAGCTCTGCAAGATAGGaacaaaacaattgaaatctAGCTTAAATCGGAAAAAAGAACAGTGTTAGAAAGCTCCAAAGCTTCTGCACAAAGAACACCATGCAGGTTGGCAGCTAGTACTACATAGCTTTGTTagtgtttaaaaccaaaaacccCATCTCACCCTTCCTTTTTCTTCATGTTATGTAACACCACTGCCCCTATTCCTATTCCTATTAGTACAAGTGGAGTGATAACCGCTGCtacaaagaaaaaggaaaacatttaatttaatgcatttttcaaaagttaaaaaaCTGAAGAATTCTGAAGATTTAAAATTCCAAAAGAACTCCAGACATGTGTGGGATTAGCTCACAGGGACAGAATGAAGGCAATATTCATGTACATACAAGAGGTCTGTTACTTAACAGTTACTTCTTTTGCACCTtgcaaaattttaaaataatacatttcaaaaaagatGTTAGAAAATATTGTCACAGATCACAAACCCAGACCTGCCAACCCCAGACAttgctttcttgagtaccaCATCAGCGGCATAAGCTAAAGTCACTTAAAACCTGTcaaccaaaaaacaatacattatgcatGAACTTCGGATAACCactcctttattatttttcttttacattaacCCGGTGTCCTGGTATCAGGATAGTGCACACTGATTATtctcaatataaagtgcaagtaaattattaataaattaaaacagaaccTCTGTAACTACTGAAAACATAAGCAGATGTAGCTCATTGCTGTTTAGTTCAGctctcaataaaaaaatacaagatttaatgaataaataaagtgaacagcagcacagtaaatgaataatacctaaaataatagtgCACTTTTTGTTCTAGCTAACCTTGCTACGTCGTGCATGACTGCAATAAGGCATTACGCatgttagttttgtttccaaCCCTCAGACAGTGggtgaagataaaaaaaaaaaaagaataatctgAAAGTCTGAAGAAAAGTGCCAAATGTGCTAAAACCTAGGCCAGTGGTATGGGGGTTGCCAAGGCCCCCTCTACGTACACGGGCAAATCCCTGGTGGGGGTTCCAAGGGGGCATAACCCCATGGGGGCCAGGCATTTCTGGTTATTTCATGAGTGTATCTGCCActagaattatataaaataagcagtGAACCTAATCAATTAATCAGCCCCAGAGCTTCATTCACAAGTAATTACGGTATGTTCGGTTTCCTAGGATTTTGCGCAGTGTTGTTTTGAGGAAGAGACAAAGCGGTTACTGTGCTGAGAACGAGTAATATGTGGAGACAATACATTGTTAAAACTGTAGGAATCTCTTGATTTCATTAAACACACCTGTTCAATCAACATCTCTCAGCTCTCTAATAACttgtttacagttaatataagtGTTTGCCATTTACTCGAATTATCACAATGGTTTTGAGTAGAGACGCTTCCGCTTCATGTGTCTCGACTTACGTGGCATCGACTCATGTCGCCGGTCTCGGAACCAATTAGGACATAACTTCGGGGGAGGACTGTGCATGAAATCCATTGCTGTGACTGTCCCTACAGCACTGCTCACTTACcggtacacacacatacacgagATATTCTCGGTTCTCATCAACCGCCACCTCACTCCCCAATTTCTTAAAATCAGCCAAATTTACTGCAAGTGATTAAGTGCTTCAAAATGCATAAACATTGAgatgctttatttttacatttttacgaATATACAATTCGGCCAAGACTGTTAGTGTTCGACTTGCATCCCATCacccaatttaaaaataattgacataattatttaataaagcattgacaatgctacagtgtcgatctagaattctatatctatggttttgacagtgctgttcacagcttcattgtgtaatgaaaatTGACATTCGCCTCCGCTAACAAGGTGGCCatagtagttttcattcagcttaacacgtccctcttgatttctgcacaaTCTTTTGCCTCACAGCCAGAGCTCGCCTCCCGTAGCAGCGTCTCAGATAGTGCGCAGATTACTGTGGGTGGGGCTTAGTGGCGCCATACAGAAACACTCCAAAAAGGTGCGTCTGAAtctctgcgcagagctgcgttTCTCAGCGCGACCCTTGTTTTGTAATGAATGTGCCTAAGCcaaatatcgaaaataaattcaatgtgtattgcgtgttgacatgaacaaacaaacatgatcaatgcacaatgaatgaagacgagatggaggagaggagtgtgggtgaaacttcacagcaaagtgaccccagtgaatctgtcccgaatAAAGGTGCGTTgttgatagtgtggacatgatttggtttcaattGACATTTGACACAGAAAAAGggaaacgtaattcaatgtcagttgtgtcctattacttttgctttacgaacagtataaaatggccattaaaaaataccgtcataccgtcagaaatgtgaaaaataccgcaatactgtattttggccatatcgcccagccctacaaTGCATACCAACGTATTTTGATGTCCAAATGTGTACGTTTCCCAAAATGTGTACAGGGTGGCAGGTCTGCAAACTATCAgcagatttctttctttcacatgaTGTGCAAAAACGTATCCAAGGTGTTACTATTAAGTTAAGAGTTGACTTACCAGCTATTACACCACCTGAGACATTACCATCAGGTGACCCATCTAAAAGAGATACAAATATAGATGTCATaaattggggggtggggtgtaaaaaacacagattaagTAGACCGATGTAAGaacttaaaacagaatgtaGAATGTACTTACTGTGAGGAGTTTCATTAGTgccacctTGAAACATGTTGGAATAGCAGGGGACCAGCCATTTTCTCCACAAGTAACAGTGCTTGATCCATTCATTGTGTAGCCAtcattgcatttaaaagtaatttgatgATTTTTTCTATAAGGTGATACACGTCCAGTGACCTTGTAGCCAAATTCAAGTGTTGGATTGGGGCACTCAATGACTTGCATTCCGGAGGTGCTGGTTTGAAGGTCCCATCTGCACTACAAACTGATTCACCATTTTCATTTCCAACCATGTCGAAGCCTCGATTACACGTATATTTGACTACCGCACCGTATTCAAATATTGGTTGCTGTGGACTCTGTGTACCATCAGGAATGGAAGGAGGTTCTTCACATTTCACAACtaaaacataagaaaagaaGAGGTCAGGGATCCTTACATATAAGTCGATCATTCAACCCTTTAAAATGCCAGTGTGAAGTTGAGCTTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57790 lncRNA upstream 1947 40386034 ~ 40389941 (+) True AMCG00013729
TU57779 lncRNA upstream 18088 40366466 ~ 40373800 (+) True G46345
TU57522 lncRNA upstream 1452377 38934463 ~ 38939511 (+) True G46138
TU57375 lncRNA upstream 1692656 38656596 ~ 38699232 (+) False AMCG00013672
TU57394 lncRNA upstream 1718417 38645278 ~ 38673471 (+) False AMCG00013665
TU57796 lncRNA downstream 3960 40416632 ~ 40425507 (+) True G46360
TU57909 lncRNA downstream 470177 40882849 ~ 40885629 (+) True G46455
TU57981 lncRNA downstream 790392 41203064 ~ 41204149 (+) True G46508
TU58024 lncRNA downstream 1000688 41413360 ~ 41413600 (+) True G46538
TU58160 lncRNA downstream 1432636 41845308 ~ 41893174 (+) True G46652
AMCG00013729 mRNA upstream 3565 40377732 ~ 40388323 (+) False AMCG00013729
AMCG00013726 mRNA upstream 50570 40327898 ~ 40341318 (+) True AMCG00013726
AMCG00013727 mRNA upstream 120451 40183935 ~ 40271437 (+) True AMCG00013727
AMCG00013725 mRNA upstream 271763 40111794 ~ 40120125 (+) True AMCG00013725
AMCG00013720 mRNA upstream 494720 39789632 ~ 39897168 (+) True AMCG00013720
AMCG00013728 mRNA downstream 32977 40445649 ~ 40467813 (+) True AMCG00013728
AMCG00013734 mRNA downstream 62353 40475025 ~ 40478788 (+) True AMCG00013734
AMCG00013731 mRNA downstream 143005 40555677 ~ 40604675 (+) True AMCG00013731
AMCG00013735 mRNA downstream 198164 40610836 ~ 40622089 (+) True AMCG00013735
AMCG00013736 mRNA downstream 250913 40663585 ~ 40665746 (+) True AMCG00013736
TU57778 other upstream 18728 40350652 ~ 40373160 (+) False G46345
TU57658 other upstream 829588 39561973 ~ 39562300 (+) True G46244
TU57427 other upstream 1569935 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 1826894 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 2018690 38370656 ~ 38373198 (+) True G45894
TU58194 other downstream 2015429 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 2015429 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 2015429 42428101 ~ 42441245 (+) False AMCG00013770
TU58242 other downstream 2232315 42644987 ~ 42648754 (+) True G46723
TU58393 other downstream 2627312 43039984 ~ 43044436 (+) True G46840

Expression Profile