RNA id: TU57909


Basic Information

Item Value
RNA id TU57909
length 2781
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G46455
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 40882849 ~ 40885629 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttgttattataataattattattttaacatacttTCATACTAGTTTACAGAACTTTGGAAAATATTTACATCCAAAATAGTTACTGTTTTGTACAACTAAgagctttatttttgtattcagtataaaaaaaaaatcatatatatatatataactgagaACATATTGGGGTATAATGGGATAATAGCATGCTAATTTAGAGGTAGttacactgtatatacacatcaGCTAGCCTACtgaaaaactatatttaaaaaaatataataaaggttTGTTGAATTtgcaatttaatatatatttttggttcagtggatttattttatagaaacaAGAGGTGCATAACTGTAACATATAGCAACTGATATTTCAAATTGATGGATTTAAGTCCTGTCACTGGTTTCTATATGCTGGTTTCTATATTGGAACTAAAGGACTAGTGCTTACATGTGGGGCTAAAATGAGagactgaaataataatatttcccCAAttgcaaacatatatatatatatatttttaaatgctgcatTGTTGGTTACATGATCATCTTAACGGTTTTGTGTTCTGTTGTAATTCTAAAACTCATTAGATTTGCACATTCCCATCTCGAAAGTGCTAATGCCATGAGCATTGCAGCATGACTTTCAAACAAAAGGCAAAGTAAGAAGTTGGTTGCAACGTcatttcttaaaagaaaatctcaaaatgTTCATGAACAGCTTGTTGTAGAATTGGTTTGATCAGCCAGAACCATCCCACGTCTCCAGACTGAATAAATGTTCCACAACCCGAAATATATTGGTGAGATAtcattaaataacattgttttgaatgtcGTGAATGTATACACTTTTTTCAGGTTTAAAATGAGAAAGCGCCTTGATTACACAAATCGAGCTTTAAACTTCCCTTGCTGATCAGCTTCTTATTTTGCCCTTTAGAAAATCAAGCTTTTAATGCTGCTTTTGTACAGGCCTAATGCAGACACAGTAACAGCTGTATTTTCACAGAAAACGGTGGACACATACTGCAGCTTTGAGCGTACTGGATGTAGCTCTCAACTCAGTACATATAGGTTTGGATTCCTGAATAGAGGAATTTCTAACAGTTTTACCCAATGACGACAGCAGATTATAACTAATCCTGGGTGTTTTGCACTAGGATTTTAATGGTCttaactcttaaaaaaaaaaaaagaaatacttaACTCGCTTGTCTAAGGTCTCTAGACACCAACACAACAAGTGAAAACATGCAATAACAGATCAAAGGGATCAAAGAAAATAGCAAGAAGGTACAACCAGTTCTATGACTGTGCCTCTGTTCAAAGTGCATGCTCCCCGTTTTGTGATTCTGCCGCAGGAAATTGTTCTTCACATTGCTTTCAGAGATCCTCAGTCATGTATGAAGCTGATAACAGGGACTGAACACAAAATGTCGGAATAAGCCTGGGCTGATTTGAAGCAAGGCTAGTCATTGTGGCATTCAgctattgctttatttaaagcATTCTTTGTGAGAATTGTATCCTGCTGAAACACATATCATTCTTCTGGGATTTCAACTGAaattctgctgttgtttttgttgagaCTGTCCTTTTGTCACAGTTATTGTCCATTTCAAACTGAGTGTTGaatatgttaaagaaaaaacaaacaaattttaGAAACTTAAGGTGTTCCTTCAGTTTTGAACTAAAGAGGAATTAATCACCCAAATCAGTATGCCATCTATATTCATGATCGCAAGCTAAAGCCTATTAATGTACTTCTGTATCAGCTTTATAAAAGCATAGTGATGAAAATCTCTCTATCAAAAATGTCTATTATATACATAACAGCTGACAGTAATCCAGAATTGCCACTTTACCAAATGAAATCAAGTTTGTTTCCAATCTCTTCATTACTGTACAGGTCTCACGTTTGTCTGTAACAATAGTTAGTTGCAGGTGTGGATATGGAACATTAAGTGTCATTCTGAAAGGTGGGGTTTGATATCCATCATTTTGACAATTATGCAAGTACTTGATTCCCTAAGTGGTTGTTTTGGTGAATTCCATTGAGAAATTCAACTCTTAGATTTCTGTATATTCcttatgtattaaattataaattagatGATAAGGGTGAGCAAGTGTAGGATCCACTTGCAATGTTACCATTATTACTGTTGACCAGGAGGTTGTCACTTTTTAAAAGTTCCTCTTTCTTGAGGCAGGGGCCTGGGCCAGAGAACGTAGTGCCCTCTTTCCTTGCTTGCTGCTGGCAGGGGATGAGAGGGACCGAAGGAGAGGTGGGGTAACGAACAGGCTCCAGCCTGGGCAGGACTGTCCCCTCAAAGAGCAGCTCCATGTCGGAGAAGGAGACCAGAGCCTGTGTGGAGTCGTAGGAACTCTTCTCCGTCTCTTCCGAAATGTACGAATCCAGGGTATCGTTCACTGAGGGCTTGGTTCTCCTCCAGAGAAGACGCAGGTCCTCTTTGAAGTGAGGGTTGAACAGGAGGTAGAGAAGGGGGTTCAGGCTGGAGGGGAGGGGCAGCAGAACCAGCAGCACGGATTTGATGACCTCCTCTCCAATGGGGAAGAGgctgaggagggaggagaaagtGAGGAAGGCCACGGGGCAGTAGAGCAGGCAGTTGGTGAAGATCAGCCAAGCCACATGTTTGATCATGGCGCAGTCCCATATACTGTCAAACTCCCCCTTCATCAGGTCCCAGTACAGCTTGATGTAGGTGCCGGTGATCACCAGGAAGCAAAGGGTGTTCATCATGATCAAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57796 lncRNA upstream 457342 40416632 ~ 40425507 (+) True G46360
TU57791 lncRNA upstream 470177 40391888 ~ 40412672 (+) True G46355
TU57790 lncRNA upstream 492908 40386034 ~ 40389941 (+) True AMCG00013729
TU57779 lncRNA upstream 509049 40366466 ~ 40373800 (+) True G46345
TU57522 lncRNA upstream 1943338 38934463 ~ 38939511 (+) True G46138
TU57981 lncRNA downstream 317435 41203064 ~ 41204149 (+) True G46508
TU58024 lncRNA downstream 527731 41413360 ~ 41413600 (+) True G46538
TU58160 lncRNA downstream 959679 41845308 ~ 41893174 (+) True G46652
TU58217 lncRNA downstream 1610117 42495746 ~ 42499599 (+) True G46701
TU58243 lncRNA downstream 1764561 42650190 ~ 42654992 (+) False AMCG00013777
AMCG00013739 mRNA upstream 32664 40845712 ~ 40850185 (+) True AMCG00013739
AMCG00013736 mRNA upstream 217103 40663585 ~ 40665746 (+) True AMCG00013736
AMCG00013735 mRNA upstream 260760 40610836 ~ 40622089 (+) True AMCG00013735
AMCG00013731 mRNA upstream 278174 40555677 ~ 40604675 (+) True AMCG00013731
AMCG00013734 mRNA upstream 404061 40475025 ~ 40478788 (+) True AMCG00013734
AMCG00013740 mRNA downstream 146463 41032092 ~ 41036684 (+) True AMCG00013740
AMCG00013741 mRNA downstream 154512 41040141 ~ 41041929 (+) True AMCG00013741
AMCG00013743 mRNA downstream 205088 41090717 ~ 41101261 (+) True AMCG00013743
AMCG00013745 mRNA downstream 245082 41130711 ~ 41134665 (+) True AMCG00013745
AMCG00013744 mRNA downstream 268390 41154019 ~ 41171939 (+) True AMCG00013744
TU57778 other upstream 509689 40350652 ~ 40373160 (+) False G46345
TU57658 other upstream 1320549 39561973 ~ 39562300 (+) True G46244
TU57427 other upstream 2060896 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 2317855 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 2509651 38370656 ~ 38373198 (+) True G45894
TU58194 other downstream 1542472 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 1542472 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 1542472 42428101 ~ 42441245 (+) False AMCG00013770
TU58242 other downstream 1759358 42644987 ~ 42648754 (+) True G46723
TU58393 other downstream 2154355 43039984 ~ 43044436 (+) True G46840

Expression Profile